| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2438 |
|---|
| Symbol | dapF |
|---|
| ID | 7861972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 2728865 |
|---|
| End bp | 2729794 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 643866534 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_002882450 |
|---|
| Protein GI | 229820924 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.270073 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.851316 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGTC TGCCGCCGAA CGGCGTCGTC AAGGGTCACG GCACCGGGAA CGACTTCCTG
CTCCTGGCCG ACCCCGAGGG CGCGCTCGCC CTCACCGAGG CCGACGTCGC GGCGCTCAGC
GACCGGCACC GTGGCCTCGG CGCGGACGGC GTCATCCGCG CCGTGCGCTC CTCGGCCATC
GCCGACGGCG CGAGCCTGCT CGAGGAGCAC CCCGAGGCCG TGTGGTTCAT GGACTACCGG
AACGCGGACG GGTCCCTCGC CGAGATGTGC GGCAACGGCA TCCGGGTGTT CGTGGAGTTC
CTGCGGGCCG AGGGCCTGCT CGACGCGGAG GACGGCGACG TCGTCCCCGT CGCGACGCGC
GCGGGCGTGC TGCCGGTGCG GATCGAGACG GACCGCTACG CCGTCGACAT GGGCCGATGG
TCAGCGCCGG GCGGTGCCGA GGCGCTCGAG GCGGGCTTCG ACGCGAGCGT CGGCGTGGCG
GGGCTCGACA GCCCTCGGCC AGGCCTGCGG CTGGCGCTGC CGAACCCGCA CGTCGTCGTC
GCGCTCGAGG ACGTCGCCCA GCTCGAGTCC ATCGATCTCA CGAAGCCGCC GCGGGTGGAC
CCGCTCGGTG AGGGCGGCAC GAACGTCGAG CTCGTCGTCG CGCTCGGCGA GCAGCGGTTC
GACGCCGACG GCACGCCGAA CGCCGAGGGC GAGCGCGTGG TCGGCATCGT GCGGATGCGG
GTCCACGAGC GCGGCGTGGG GGAGACGCTC TCGTGCGGCA CCGGTGCCTG TGCGGCGGCC
CTCGCGGTCC GTGCCTGGGC CGGCGCCGGC GCGCCCGACG AGTGGCTCGT GCTCGTGCCC
GGCGGGCAGC TCCAGGTGCG CGTGCTGCCC GAGGACCACG TCGAGCTGTC CGGGCCCGCG
GAGCTCGTGG CGCGCGCGAT CTCGATGTGA
|
|---|
| Protein sequence | MLSLPPNGVV KGHGTGNDFL LLADPEGALA LTEADVAALS DRHRGLGADG VIRAVRSSAI
ADGASLLEEH PEAVWFMDYR NADGSLAEMC GNGIRVFVEF LRAEGLLDAE DGDVVPVATR
AGVLPVRIET DRYAVDMGRW SAPGGAEALE AGFDASVGVA GLDSPRPGLR LALPNPHVVV
ALEDVAQLES IDLTKPPRVD PLGEGGTNVE LVVALGEQRF DADGTPNAEG ERVVGIVRMR
VHERGVGETL SCGTGACAAA LAVRAWAGAG APDEWLVLVP GGQLQVRVLP EDHVELSGPA
ELVARAISM
|
|---|
| |