Gene Bcav_1560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_1560 
Symbol 
ID7859716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp1792120 
End bp1793268 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content73% 
IMG OID643865645 
Producthypothetical protein 
Protein accessionYP_002881578 
Protein GI229820052 
COG category[S] Function unknown 
COG ID[COG2311] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.214975 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.807756 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACCTCG CTGGTTACCC TGACCCGGTG ACCCAGACCG TCGCCTCCTC GCGCCCTCGC 
GCCGCGCGCA CGGGCGCGCG CATCGAGGGC GTCGACGTCG CGCGCGGCCT CGCGGTCCTC
GGCATGTTCG TCGCGCACCT CGGGACGGGG CACCATCCGG CCGGGGACGG ATGGGGCTCC
CAGTGGATGT GGGTGGTCGA CGGACGCTCG TCGGCCCTGT TCGCGATGCT GGCCGGCGTG
GGGCTGGCGT TCATCACGCG TTCCGTCGTT CCCGGCGACG CCGTCGCGAT GCGTCGCGCA
CGCGTCAAGA TCGTCGTGCG CTCGGGGATC ATCCTCGTCC TCGGGTGGGC CTTGATGCTG
CTGGGCACCC CCGTCGCCGT GATCCTGCCG ACGTACGCGT TCCTGTTCGT CATGGCGCTG
CCGTTCCTGC GCCTGCGCCC GCCGGCCCTG CTCGCCGTCG CCGCCGCCGT GCTCGTCGTC
GGGTCGCCGC TCGTGCTTGG CCTGCGCGAG TCGCTGACCG GGACCGTCGA GCCGACGCAG
CCGACGCTCG TCGTCGGCGA GCTGCTCACC GGGTACTACC CGGCGCTCGT GTGGATCGCG
TACCTGCTCG TGGGCCTCGC CGTCGGGCGG CTCGGCCTCG GCCGCTTGGC CACCCAGTGG
TGGTTCGTCG GCGCCGGGGC CGCCCTGGCC GTCGTCGCGT ACGGTCTCGG CGTCGTGCTG
GCCGACGTCA CGGGCGCCGA CACGACGTCG TGGCCCGGCG TGCTCGTCTC GACGGAGCCG
CACTCGTCAT CGATGTTCGA GATGGCCGGG AACATCGGCG TCGCCGTCGC CGTCCTCGGG
CTGTGCCTCC TCGCGACGCG TGGCGTCGTG GGCGCCGTCG CGCTGCGGCC GATCGCCGCC
ACCGGCGCGA TGTCGCTCAC CGTGTACACG ATCCAGATCG TCGCGATCGC GATCGTGGGC
TCCGACGCCG TCTGGTACCC GACGTCGAAC GGCCCGCTGC TCGTGATCGG CCTCGGCTGC
ATCGTCTTCG CGCTGGTGTG GCAGCTCACG CTGGGCCGCG GTCCGCTCGA ACGGCTGCTC
AAAGTGGCCG CCGACGCCGC CACCCGCGAG CGCACGCCGC CCGTCTACCC GCCGGGCACG
CGGCCATGA
 
Protein sequence
MDLAGYPDPV TQTVASSRPR AARTGARIEG VDVARGLAVL GMFVAHLGTG HHPAGDGWGS 
QWMWVVDGRS SALFAMLAGV GLAFITRSVV PGDAVAMRRA RVKIVVRSGI ILVLGWALML
LGTPVAVILP TYAFLFVMAL PFLRLRPPAL LAVAAAVLVV GSPLVLGLRE SLTGTVEPTQ
PTLVVGELLT GYYPALVWIA YLLVGLAVGR LGLGRLATQW WFVGAGAALA VVAYGLGVVL
ADVTGADTTS WPGVLVSTEP HSSSMFEMAG NIGVAVAVLG LCLLATRGVV GAVALRPIAA
TGAMSLTVYT IQIVAIAIVG SDAVWYPTSN GPLLVIGLGC IVFALVWQLT LGRGPLERLL
KVAADAATRE RTPPVYPPGT RP