| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1375 |
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| Symbol | ligA |
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| ID | 7861675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beutenbergia cavernae DSM 12333 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012669 |
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| Strand | + |
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| Start bp | 1568695 |
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| End bp | 1571043 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 643865459 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_002881396 |
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| Protein GI | 229819870 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCCC CGCGCGCCAC AATTGCCCTC GTGACCCCCT CGATGCCCAC GCCGCCAGTG
CCGCCCGAGG CAGCGCACCG TTGGGCGGAG CTCGCCCAGC AGGTCAACGA CGCCCGGTTC
GCGTACTACG TCAAGGACGC TCCGACGCTC AGCGACGCGG CGTTCGACGC CCTGCTGCAC
GAGCTCGAGG CGCTGGAGGA GTCGCACCCC GAGCTCCGGG TGCCCGACTC GCCCACGCAG
CAGGTGGGAG GCACGTTCTC CACCGAGTTC ACCGCCGTCG AGCACGTCGA GCGCATGCTG
TCGCTGGACA ACGCGTTCTC CGCCGAGGGC GTCGAGTCCT GGGCGCAGCG GGTGGAACGC
GACCTGGACG CCGCGGCCGC GGGCCTGCAC TACCTGTGCG AGCTGAAGAT CGACGGGCTC
GCCATCGCGC TGCTCTACGA GGGCGGGCGC CTCGTGCGCG CCGCGACCCG CGGCGACGGC
CGCACCGGCG AGGACGTCAC GCTCAACGTC CGCACCATCG CCTCCATCCC GCACGTCCTG
GGCGGAGACG CCGCGAGCCA CCCCGCGCGC ATCGAGATCC GCGGCGAGGT GTTCCTGCCC
GTCGAGGCGT TCGAGGCGCT GAACTCCTCC CAGGTCGAGG CGGGGAAGTC GCCCTTCGCG
AACCCGCGCA ACGCCGCCGC CGGGTCGCTG CGGCAGAAGG ACCCGCGCGT GACGGCGCGG
CGTGCGCTGG GCATGTACGC GCACGGCATC GGCGCGCTCG ACTGGGGCGA CGCGCCGGAG
GCGTCGTCGA TCACGCGCCA GTCGCAGGTG TACGAGCTGC TGTCGTCGTG GGGCGTGCCG
ACGTCGCCGC ACACGCGCGT CGTCGACGAC CTGGCCGGCG TGCAGGAGAT GATCGCGTAC
TACGGCGAGC ACCGGCACGA CGTCGAGCAC GAGATCGACG GCGTCGTCGT CAAGGTCGAC
GAGGTGGCGC TGCAGCGCCG GCTCGGCGCC ACGTCGCGGG CGCCGCGCTG GGCGATCGCG
TACAAGTACC CGCCGGAGGA GGTCAACACG CGCCTGCTCG ACATCCGTGT CAGCGTGGGC
CGCACGGGCC GCGTCACGCC GTACGGCGTC ATGGAACCCG TCGTCGTGGC GGGGTCGACG
GTGGAGGCGG CCACGCTGCA CAACGCGAGC GAGGTCAAGC GCAAGGGCGT GCTCATCGGC
GACACGGTCG TGCTGCGCAA GGCGGGCGAC GTGATCCCGG AGATCGTCGG CCCGGTGGTG
GCCCTGCGGG AAGGGCGCGA GAGCGAGCTG CGCGAGTTCG TCATGCCCGA CGTCTGCCCC
TCCTGCGGCA CGCCTCTCGC GCCGGCGAAG GAGGGCGACG TCGACATCCG GTGCCCGAAC
GCGCGCTCGT GCCCGGCGCA GCTGTCGGAG CGGGTCTCCG CGCTGGGCGG ACGTGGAGGG
TTCGACATCG AGGCGCTCGG GTGGGAGGCG GCGACCGCGC TCACCGACCC GGAGCGGGGC
CGGCCGGTCG ACGCGTCCGT CTACCGGCCC GGGGCCGACC TGACGGCCGA GGCTCCGGCG
GCGCTCCCGG ACCGGCAGGC TCCCGTGCTC GCCACCGAGG CGGGCCTGTT CGAGCTGACG
CCCGACGACG TCGCGAACGT GCGCGTCTGG CGGGAGATCA AGCGCAAGGG GGAGGCCACG
GGGTTCTGGG AGGACCGGCC CTTCTTCTTC ACGAAGGGCA CGGCCAAGGT GCCGCCGAAG
CCGACCCAGA CCACCCAGGT GCTCTTCGAC CAGCTCGAGC TCGCCAAGAC GCGCCCGCTC
TGGCGCGTGC TCGTCGCCCT CTCGATCCGG CACGTCGGCC CCACGGCGGC CCGGGCGCTC
GCGCAGCGCT TCGGTTCGAT CGACGCCATC GACGCCGCCA GCGAGGAGGA GCTGGCGGCC
GCCGACGGCG TCGGGCCGAC GATCGCAGCG GCCGTCAAGG AGTGGCTGGG CGACCCCGAG
GCGCCCGACA ACTGGCGCCG CGAGATCGTG CGCCGCTGGG CGGCGGCGGG CGTGCGGATG
GCCGACGAGC GCGACGAGTC GGTGCCGCGC ACGCTCGAGG GTCTGACCGT CGTCGTCACC
GGTTCCCTCG AGCGGTTCAC GCGCGACGGC GCGAAGGAGG CGGTCCTCGC GCGCGGCGGC
AAGGCCGCGG GGTCGGTGTC GAAGAGCACC GACTTCGTCG TCGTGGGGGA GAACGCCGGC
TCGAAGGAGA CGAAGGCGCG TGAGCTCGGG CGCCCGATCC TCGACGAGGC GGGCTTCGAG
CGCCTGCTCG CGGAGGGACC GGACGCCGTC GCCGAGAGCG CCGACTCCTC GGAGGCCGTC
ACGTCCTGA
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| Protein sequence | MSAPRATIAL VTPSMPTPPV PPEAAHRWAE LAQQVNDARF AYYVKDAPTL SDAAFDALLH
ELEALEESHP ELRVPDSPTQ QVGGTFSTEF TAVEHVERML SLDNAFSAEG VESWAQRVER
DLDAAAAGLH YLCELKIDGL AIALLYEGGR LVRAATRGDG RTGEDVTLNV RTIASIPHVL
GGDAASHPAR IEIRGEVFLP VEAFEALNSS QVEAGKSPFA NPRNAAAGSL RQKDPRVTAR
RALGMYAHGI GALDWGDAPE ASSITRQSQV YELLSSWGVP TSPHTRVVDD LAGVQEMIAY
YGEHRHDVEH EIDGVVVKVD EVALQRRLGA TSRAPRWAIA YKYPPEEVNT RLLDIRVSVG
RTGRVTPYGV MEPVVVAGST VEAATLHNAS EVKRKGVLIG DTVVLRKAGD VIPEIVGPVV
ALREGRESEL REFVMPDVCP SCGTPLAPAK EGDVDIRCPN ARSCPAQLSE RVSALGGRGG
FDIEALGWEA ATALTDPERG RPVDASVYRP GADLTAEAPA ALPDRQAPVL ATEAGLFELT
PDDVANVRVW REIKRKGEAT GFWEDRPFFF TKGTAKVPPK PTQTTQVLFD QLELAKTRPL
WRVLVALSIR HVGPTAARAL AQRFGSIDAI DAASEEELAA ADGVGPTIAA AVKEWLGDPE
APDNWRREIV RRWAAAGVRM ADERDESVPR TLEGLTVVVT GSLERFTRDG AKEAVLARGG
KAAGSVSKST DFVVVGENAG SKETKARELG RPILDEAGFE RLLAEGPDAV AESADSSEAV
TS
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