| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_46700 |
|---|
| Symbol | |
|---|
| ID | 7763533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 4739307 |
|---|
| End bp | 4740122 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643807514 |
|---|
| Product | shikimate/quinate 5-dehydrogenase |
|---|
| Protein accession | YP_002801750 |
|---|
| Protein GI | 226946677 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAAT CCATTCCCAC CCTGTGCGGC TCGATCATGG GCGAGCCCTT CTCGCTGGGC
GAGAAGATCC ACAACGCGGC CTATGCGGCG CTCGGACTCG ACTACACCTT CGTATGCTTC
GGCGTCGAGG ACCCGCGCGC CGCCGTCCAG GCGATACGGA CGCTGGGCGT GCGCGGGATG
AACGTGTCCA TGCCGTACAA ATCGGCCGTG ATGCCGTACC TCGACGCGAT CGACGAATCG
ACCCGGGCGA TCGGCGCGGT CAACACCATC GACAACCGGG ACGGCGTGCT GACCGGCTAC
AACACGGACT ACCTGGGCGC GGTGCGCGCC TTGCAGGAAG CGATCCGGCC GGCCGGCAAG
CGCATCGCGG TCATCGGCGC CGGCGGAGCG GCGAAGGCGG TCGCCTATGG CTGCCGGCAG
GCCGGCGCCC GAGTGGAAGT CTTCAATCGC AGCGCGGAAC GCGGCAGGAC GCTCGCCGAA
TCGCTGGAAG TCGGATTCGG CGGCAGCATC GACGACTTCG CGGCCGACGC CTTCGACGTC
GTCATCAACG CGACCTCGGC CGGCTTCCGC CAGCCCGGGA CGAATCCCCT GGACGGCCGG
CTGGCCTCCC ACCTGGTGGT GATGGATGTC GCCTTCATTC CGGTCGAGAC GGCGCTGCTG
CGCCAGGCGC GGCAGCTCGG CTGCACGACC GTCGCCGGCA CCCGCATGCT CGTGCACCAG
GCCTGCCGGC AGATCGAACT CTACACGGGT CAGGACGCGC CCATCGCGGT GATGGAACGC
GCGATGCTGC AGGAGATCGA GCGCCTGCGC CTGTGA
|
|---|
| Protein sequence | MPKSIPTLCG SIMGEPFSLG EKIHNAAYAA LGLDYTFVCF GVEDPRAAVQ AIRTLGVRGM
NVSMPYKSAV MPYLDAIDES TRAIGAVNTI DNRDGVLTGY NTDYLGAVRA LQEAIRPAGK
RIAVIGAGGA AKAVAYGCRQ AGARVEVFNR SAERGRTLAE SLEVGFGGSI DDFAADAFDV
VINATSAGFR QPGTNPLDGR LASHLVVMDV AFIPVETALL RQARQLGCTT VAGTRMLVHQ
ACRQIELYTG QDAPIAVMER AMLQEIERLR L
|
|---|
| |