Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avin_29100 |
Symbol | |
ID | 7761813 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Azotobacter vinelandii DJ |
Kingdom | Bacteria |
Replicon accession | NC_012560 |
Strand | - |
Start bp | 3001830 |
End bp | 3003674 |
Gene Length | 1845 bp |
Protein Length | 614 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 643805786 |
Product | type II and III secretion system protein |
Protein accession | YP_002800054 |
Protein GI | 226944981 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0223781 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCATCG CAATGCGCAA GGCCGCAGCT GCCTTCTGGT TGCCCGTGCT GCTGGGCGGC GTGCTGCTGT CCGGCTGCGC CGGGCAGCCC GCCAAGGAAG GCATCGCCCT GATCGACCAG GGCCGCTATG AGGAAGGGCT GGTGCAACTG GCCGAGGCCG CGCATCGGGC GCCGGACGAC ACCGGCGTGC AGATCGCCCT GGCCACCCAG CGCGCGCTGG CGGTCTCCAG GTTGCTGGGC CAGGCCGAAA AGGCGCGCGT CGCGCGCGAC AACGAGGCCG CACAGGTCGC CTTCCAGCGA GTGCTGGCCA TCGAGCCGGG CAATGCCCGG GCCGCCGAAG GCATGCGCCA GATCGTTCAG TTGCGCAACG TCGCCGAGCA TTACCGCCAG GCCGGGCTGG CCCTGAGCCG CGGCGACCTC GCCGGGGCCG AGCGGCTGGT GCGCTCGATC CTCGCCCTGG AGCCGCAGCA CGAGGGCGCG CTGGCCCTGC AGGCGGGCAT CGAGGGCACC CGCGCGCAGA CCGCCGTCGC CTATCCGCAG CTGCGCTCCA GGCTGCAGCA GCCGGTGAGC CTGGAGTTCC GCGAGGCCAA CCTGAAGCTG GTGTTCGAGG TGCTGGCGCA GACCGCGGGA ATGAACTTCA TCTTCGACCA GGATGTGAGC CCGGACCTCA AGGCGACCAT CTACGTGCGC CAGGTGCCCA TCGAGGAGGC GGTGGACCTG CTGCTGCAGC AGGGCCAGTT GAAGCACAAG GTGGTCAACG AAAACACCGT GCTGATCTAT CCGAACACCC CGCAGAAGCT CAAGGACTAC CAGGAACTGG TGCTGAAGAC CTTCTACCTG ACCAACATCG ACGCCAATAC CGCGCTGAAC ATGGTCAAGA CCCTGCTCAA GACCCGCGAC GTGTTCGTCG ACGAGCGCCT CAACACCCTG ACCATGCGCG ACACACCGGA CGCGGTGCAC CTGGCCGAGC GGCTGTTCCT GGCCCAGGAC CAGGCCAATC CCGAGGTGGT GCTGGAACTG GAGGTGATGG AGGTGTCGCG CAAGCGCATC CTCGACCTCG GCCTGCAGTG GCCGAACACC TTCGGCATCC TCGCCGAGGA TGGCACCAGC GCGGTGAGCA TTCTCGGCCA GTTGCGCGGC ATCGATTCCG ACCGCATCAA CTTCTCGCCG TCGCCGACGC TGAAAATCAA CGCCAACGAC AGCGACGTCA ACACCCTCGC CAGCCCGGTG CTGCGGGTGA GCAACCGCGA GCAGGCGCGC ATCCACATCG GCGAACGGGT GCCGGTGGTC AGCGCCACCT CGACGCCCTC GACCCAGGGG CCGGTGATCA CCGAGAACAT CACCTACCTG GACGTGGGCC TGAAACTGGA AGTCGAGCCG ACCATCCACC TGAACGACGA GGTGGCCATC AAGGTGGGGC TGGAAGTGAG CAACGCCACC CAGTTGACGC GCACGGAGGC GGGGACCATC CCGATCCAGG TCGATACCCG CAACGCGGTC ACCACCCTGC GCCTGCGCAA CGGCGAAACC CAGGTGCTGG CCGGCCTGAT GCGCAACGAT CAGGGCAAGT CGGGCGACCG CATCCCCGGA CTGGGCGATA TCCCCGGCAT CGGCCGGCTG TTCGGCAGCA ACAAGGACAC CCTGAGCAAG TCCGAGCTGG TGCTCTCGAT CACCCCGCGC ATCGTGCGCA ACCTGCCGTA CCAGAATCCC TACGACATGG AATTCGAGTC CGGCACCGAG AGCAGTCTGC GCCTGCGTCC GGCCGCACTG CCGCGCAAGG CCGGGGCCGC TCTGCGCGGT CAGGCTTCCG AGCCGCTGGC CGCCGCCGGG CTGGAGCGGC CATGA
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Protein sequence | MTIAMRKAAA AFWLPVLLGG VLLSGCAGQP AKEGIALIDQ GRYEEGLVQL AEAAHRAPDD TGVQIALATQ RALAVSRLLG QAEKARVARD NEAAQVAFQR VLAIEPGNAR AAEGMRQIVQ LRNVAEHYRQ AGLALSRGDL AGAERLVRSI LALEPQHEGA LALQAGIEGT RAQTAVAYPQ LRSRLQQPVS LEFREANLKL VFEVLAQTAG MNFIFDQDVS PDLKATIYVR QVPIEEAVDL LLQQGQLKHK VVNENTVLIY PNTPQKLKDY QELVLKTFYL TNIDANTALN MVKTLLKTRD VFVDERLNTL TMRDTPDAVH LAERLFLAQD QANPEVVLEL EVMEVSRKRI LDLGLQWPNT FGILAEDGTS AVSILGQLRG IDSDRINFSP SPTLKINAND SDVNTLASPV LRVSNREQAR IHIGERVPVV SATSTPSTQG PVITENITYL DVGLKLEVEP TIHLNDEVAI KVGLEVSNAT QLTRTEAGTI PIQVDTRNAV TTLRLRNGET QVLAGLMRND QGKSGDRIPG LGDIPGIGRL FGSNKDTLSK SELVLSITPR IVRNLPYQNP YDMEFESGTE SSLRLRPAAL PRKAGAALRG QASEPLAAAG LERP
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