| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_28070 |
|---|
| Symbol | |
|---|
| ID | 7761712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 2894260 |
|---|
| End bp | 2895588 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643805686 |
|---|
| Product | cysteine desulfurase-like protein |
|---|
| Protein accession | YP_002799954 |
|---|
| Protein GI | 226944881 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.622503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCCGC GCGATAGTCA CCTGTTTTTG CACTCAAATT GCGCTAGAGG AAATGTAGGA
TATGCCTTGT CGATTCAATG TTCTTTTATG GGAGTCTTAG CAATGCCTAC CTTGGACTTG
TCTTTTGTAC GTAGCCAATT CCCCGCCTTT GCAGAACCCT CTCTCGATGG GCAGGGCTTT
TTCGATAATG CCGGCGGCTC CTACACCTGC CAACAAGTGA TCGATCATCT TAACCGATAC
TATCGGCAAA TGAAGATCCA ACCCTACGGT GCTCATCCAG CTTCGCGTAG GGCTGGGGAA
GAGATGGACC ATTCACACGT AGAGATTGCC AGTTACTTGG GGGTATCTGC AGAAGAAGTC
CATCTTGGAC CCTCTACATC CCAGAATACT TATGTGCTCG CAGAGGCATT CGGTAACCGT
CTCCAACCAG GGGATGAAAT CATTGTCACG AACCAAGACC ACGAAGCAAA CAACGGTGTA
TGGCGTCGCC TCGCCAAGCG AGGCATTGTG ATCAAAGAGT GGCAGGTCAA TCCTTCGACG
GGTTCGCTGA ATACCGAAGC ACTTCAAGCC CTGCTGTCGA CGCGTACAAA GGTAGTGGCA
TTCACTCACT GCTCGAACAT CCTGGGTGAA ATCAACCCAG TTCGTAAAAT CTGCGAGATC
GTCCACGCGG CTGGTGCACT CGCTGTGGTT GACGGAGTTT CCTATGCCGG TCATGGGCTG
CCCGATGTCT CTCAACTAGG TGCCGATATC TACCTTTTCT CACTGTACAA AACATTTGGT
CCCCATCTCG GCGCAATGGT AATCCGACGC CCCTTGATGG ACTTTCTAGG CAATCAAGCT
CACTATTTCA ACGAAGCGTA TCTGGCCAAA TGGTTTGTTC CAGCCGGTCC TGACCATGCT
CAAGTAGCTG CGGCTAGCGG AGTCACGGCT TACTTCGACA AGGTCCATGA GTATCACTTC
CCTAGTGCAG ACAGTAAACA TCGCGCTGAA AATGTGAGGA CACTGTTTAG AGAAGCAGAA
GCCTCTCTAC TTCCAACACT GCTTGAGTTC TGTGGCGGCG ATTCACGAGT TCGCCTCCTC
GGCCCGATTG AAGCAATAAA GCGCTCGGCG ACGGTATCCA TTCAAACACT GAGCGCCACT
CCACGAGAAA TCTCTGAGCG GTTGGCAAAG AAAGGAATTA TCGCGGGTGC AGGTCACTTC
TATGCAGTTC GTCTACTCGA GGCGCTGGGG GTAAATTCTG CTGAGGGGGT GCTGCGCCTG
TCTTTCGCTC ACTACTCCAG CCCAGAAGAG ATCCAACAGC TCATTAACGC TTTGAACGAA
GCACTTTAA
|
|---|
| Protein sequence | MSPRDSHLFL HSNCARGNVG YALSIQCSFM GVLAMPTLDL SFVRSQFPAF AEPSLDGQGF
FDNAGGSYTC QQVIDHLNRY YRQMKIQPYG AHPASRRAGE EMDHSHVEIA SYLGVSAEEV
HLGPSTSQNT YVLAEAFGNR LQPGDEIIVT NQDHEANNGV WRRLAKRGIV IKEWQVNPST
GSLNTEALQA LLSTRTKVVA FTHCSNILGE INPVRKICEI VHAAGALAVV DGVSYAGHGL
PDVSQLGADI YLFSLYKTFG PHLGAMVIRR PLMDFLGNQA HYFNEAYLAK WFVPAGPDHA
QVAAASGVTA YFDKVHEYHF PSADSKHRAE NVRTLFREAE ASLLPTLLEF CGGDSRVRLL
GPIEAIKRSA TVSIQTLSAT PREISERLAK KGIIAGAGHF YAVRLLEALG VNSAEGVLRL
SFAHYSSPEE IQQLINALNE AL
|
|---|
| |