Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cla_1530 |
Symbol | |
ID | 7411276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter lari RM2100 |
Kingdom | Bacteria |
Replicon accession | NC_012039 |
Strand | + |
Start bp | 1481415 |
End bp | 1484672 |
Gene Length | 3258 bp |
Protein Length | 1085 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 643718651 |
Product | conserved hypothetical protein, hemagglutination domain protein |
Protein accession | YP_002576085 |
Protein GI | 222824511 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01901] filamentous haemagglutinin family N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.307259 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGT TAGCAAATCA TATAATACTT TCAGGTGTAA CTGTATCTAT GTTATTTTCT CCACTAATGG CCTTACCTAG TGGAGGTAAA TTTACTCATG GCACAAGTGG GACTATAACC ACTAATGGTA ATAATATGAA TATTAGTGGA AATGGAATAA ACTCAGTTAT CCAATGGGGT GGTGGATTTA ATATAGCAAA TGGAGAAAAG GTAAATTTTG GAGGTAAAGA CAAAAACTAC CTAAATATTG CCCACGGTAC TAGTAAATCT ACCATAGCTG GTATATTAAA CGCAGGTGGT AATAATGTAT TTTTAATCAA TCCTAATGGA GTAATCATTA CTAAAACAGG AACTATCAAT GCTAATCGCT TTGTGGCTTC GACTTCATCG ATGAGTGATG GGGATATGAA AGCATTTGCT AACTTAAAAA GCTTTGAAGA TGGTTTAAGC TTTTCCCCTG TATTTAAACC AAACAAAGCA GGTAATGTGG TAAATATGGG TAATATTAAT GCTAAAAACA TTACTTTACA AGGTAATAAA GTAATGTTAA GTGCTGATAC TAGTTGGGAT GATAAAAATA ATAAAATAAA ATTCAATCAA ATCACAGCAG ATAATATAGA TTTAAAAGGT AATGAAATTT ATGTAGATAT TTCTACTATA AATTCTAAAA ATCTAACTAC TGAAGCAAAA AATAAAGGAA TTGCTTATTT AAGTGCTACT GGGTATTATT ATAATCCTAC AAGAAAATAC AATGAATTTA AAAATATAAA CAACAAAATC AAAAAAACAT ACAATCAATA TATTAGCATA GGTTCTGATG TAGACTGGTG GCATTTTGCT AAAGGGTGGA ATGAAAATGA AGATTTTAGA AACAATGTAG CGGAAGATAC CTTTAAACTG ACTAATGATA TAGATTTTGG AGCTAATTGT AAAAATGGAG TATGTAGTGG ACAAAACTAT GCAAATTACT GGGTAGATTT AAATGGTGAT GGTAAAAAAG ATGCTAATGA GTATACTAAT ATGATGGTAG GTAGTGGTGA ATTTTTTACC AAAACCTTTG ATGGTCAAGG ATTTACGCTA AAAAATATCA ATATAGATAT TACTAATTGG GGATCTGTTG GTATATTTGC AAGCGCATCA TCTGGTGCTA ATTTTAAAAA TATCAATGTA GATTATATGG GTGGTGGAAT TAACGCAAAA GGTACTAGAT GGGTCGGTGG ATTTATAGGA ACCTCTTATA TGCGTTTTGG TCCTTCGTTT TCAAATATAT CTTTAAATAA AATAGGAAGT ATCAACAGTG GTGGTTCTGT TGGCCCTGTT GGTGGTTTTG CTGGCTCGGC TTATAATAAT ACTTTTTCAA ATATATCCTT AAATGAAATA GGAAATATTA GTGGTAATAG TAATTTTAAA TATGCTTTTT CTTCCATTGG TGGATTTGTT GGTGAAAGCA TGGATAGTAC TTTTTCAAAT ATATCTTTGA ATAAAATAGG AAATATTAGT GGTAATAGTG AAACAAATAC TATTTATGTT GGTGGATTTG TTGGTTATGC TAATGAAAAA AATAATTTTT CAGATATCAT AATTAAAAAA ATAGAAAATA TCTCAAGCAT TTCTAACAAT TGTTCGCACT CTGGTGGATT TGCAGGAGGA GGGCTTATGG GAGGAAAATT TGAACGAATT TTCCTTGAAA ACATTGCTAA TATAAATAGT ACATCAAAAT CTAAAAGTGC TTATGCGGGA GGATTTATTG GAAACAATAT ATCTTATTAT ACAACATACT ACAATGAAAA ATTTATTTTT GATGTAAATA ATATTTCTTT AAAAGGGGTA TCAAATATTA CAAGTAAGGC CGAAAATGCT TATGCGGGAG GATTTGCAGG ATTTTTTATT GAAAAAAGGA AGGTGGAAGA TTACGATGGT AGTAAAAATG GTTATAGTTA TAAAATAAAT TTAAAAAATA TTTATATGTA TTTTGATGAG GATGCAAAAA TCACAGCTAA TAATAATAAA AATAATTTTA CAGGTAAATT TTATGGTGGC ATGGAAGATA TTAAAGAAAT AGCATTTGAT AATATCCACA TTTATTATAA AAAAGATACT TTAACCAATG CAACAGCTGA TGATAAATAT CTAAATAAAC AAGACTTTAA TAAAAATGCT AATAATGTTA ATAAAATTAA TGCATACGCT TATTCTGATA GTAATAAGGA ACAAGCGTAT GAAAATTTTA TAAATCATGT TAATACTATC TCTAAACCTA TCTTTCCTAT AATACCACCA TCCAAACCAT CACAAAATAC AGATTATATC CCTAACGCAG AAGATATTAT CAATAAAACA GCTGTTTTAG ATGAAAATGA TTTACTTAAA GAAATGATTA AGAACGAAAT CATTGCTGAT ATCACCAATG GAAAATATAA ATTACATATA AGTGATTTAT TAAAAATGCT AGAAGATAAA ACAAATTATT CTAATATGAG TGAAAATCAA AAGATTGAAT TTATAGCCAA ATACTTTCTA AGTGGTGATA AAACTAAAGC TTTAGAAGTA GTTCAAAGCT TAGATTTTCT TTTAGCTTAT GAAAACAATG GTTTAAGCAC TGCTTCAGAA GATAAATTTG AAGGAAATGG TTTTGGTGTT AAAAATGAAA TATTAAGCCA AGTAAATAAT ACAACCGAAA ATATCAAAGG CAAATTCAAT CAACTAAAAG AGTTAGAACC TTTGGTGAAT AGTTCTAATA AATATCTAAA AGATCTTATT ACTAAGCAAA ATGAGCTTGA TAATGCCATC AAAGCTTACA ATACTTATGT GGATTTAATC AATAAAGGTT TTGCAAGCGC AGATGATAGA GAATTTATTA TTTTAAAAGA CCAAATAAAT ACTCTAATGA AAGAGAGTCA AGTTTTAGCA GATTCAATCA ATGAAAATCA GGGAAAACTA ATTGATTGGC AAAATAATAA CAATACAGAA AATTTCAAAG TAGTTGGTGC TTTTGCTAAT GTAATATTAA ACACTAATCC TAAGTTAGAT CAAATCACAG GCAAGGGAGG AGATATAGAT AACCCAAACA AACCAGAATT ACCTGAAACT GATATGGAGT TTGAACAAAC AGCTTCACTT AATCTAATAG GCGATAATGC CATAGAAGAC AATGAAGGAA AAAAAGAAAT AGAGGAAACC TCACTCGCAC AAAAAAATAA AACTTGCATA GTAAGTGATA ATTACAAAAC TATGAATCCT TGTGTAGTGG GTATGTAA
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Protein sequence | MKKLANHIIL SGVTVSMLFS PLMALPSGGK FTHGTSGTIT TNGNNMNISG NGINSVIQWG GGFNIANGEK VNFGGKDKNY LNIAHGTSKS TIAGILNAGG NNVFLINPNG VIITKTGTIN ANRFVASTSS MSDGDMKAFA NLKSFEDGLS FSPVFKPNKA GNVVNMGNIN AKNITLQGNK VMLSADTSWD DKNNKIKFNQ ITADNIDLKG NEIYVDISTI NSKNLTTEAK NKGIAYLSAT GYYYNPTRKY NEFKNINNKI KKTYNQYISI GSDVDWWHFA KGWNENEDFR NNVAEDTFKL TNDIDFGANC KNGVCSGQNY ANYWVDLNGD GKKDANEYTN MMVGSGEFFT KTFDGQGFTL KNINIDITNW GSVGIFASAS SGANFKNINV DYMGGGINAK GTRWVGGFIG TSYMRFGPSF SNISLNKIGS INSGGSVGPV GGFAGSAYNN TFSNISLNEI GNISGNSNFK YAFSSIGGFV GESMDSTFSN ISLNKIGNIS GNSETNTIYV GGFVGYANEK NNFSDIIIKK IENISSISNN CSHSGGFAGG GLMGGKFERI FLENIANINS TSKSKSAYAG GFIGNNISYY TTYYNEKFIF DVNNISLKGV SNITSKAENA YAGGFAGFFI EKRKVEDYDG SKNGYSYKIN LKNIYMYFDE DAKITANNNK NNFTGKFYGG MEDIKEIAFD NIHIYYKKDT LTNATADDKY LNKQDFNKNA NNVNKINAYA YSDSNKEQAY ENFINHVNTI SKPIFPIIPP SKPSQNTDYI PNAEDIINKT AVLDENDLLK EMIKNEIIAD ITNGKYKLHI SDLLKMLEDK TNYSNMSENQ KIEFIAKYFL SGDKTKALEV VQSLDFLLAY ENNGLSTASE DKFEGNGFGV KNEILSQVNN TTENIKGKFN QLKELEPLVN SSNKYLKDLI TKQNELDNAI KAYNTYVDLI NKGFASADDR EFIILKDQIN TLMKESQVLA DSINENQGKL IDWQNNNNTE NFKVVGAFAN VILNTNPKLD QITGKGGDID NPNKPELPET DMEFEQTASL NLIGDNAIED NEGKKEIEET SLAQKNKTCI VSDNYKTMNP CVVGM
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