Gene Cla_1345 details

Gene Information

• Locus tag: Cla_1345
• Symbol: trpB
• ID: 7409851
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: +
• Start bp: 1292602
• End bp: 1293777
• Gene Length: 1176 bp
• Protein Length: 391 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 643718467
• Product: tryptophan synthase subunit beta
• Protein accession: YP_002575912
• Protein GI: 222824338
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0133] Tryptophan synthase beta chain
• TIGRFAM ID: [TIGR00263] tryptophan synthase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 0.259288
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAT ATTATGGAAA ATTTGGTGGG CAATTTGTGC CAAATGAAGT AAAAATAGCA 
CTAGATGAAG TAGAAAAAGC TTTTTTAAAA CTCAAAAAAG ATAAAGATTT TAACGCAGAA 
TTAAAAGAAC TCTTAGCTAA TTATATAGGA AGACCCACAC CCTTATACCA TGCTAAAAAT 
TTAAGCAAGC TTTATAATCA TGAAATTTAT TTAAAAAGAG AAGATTTAAC TCACACAGGA 
GCTCATAAGA TCAATAATGC CATAGCTCAA GCCTTAATGG CAAAGAAAAT GAATAAGAAA 
AAAATTATCG CAGAAACTGG AGCAGGACAA CACGGGCTTG CAACAGCTAC CGCAGCAGCC 
CTTTTAGGAC TTGAATGTGA GATATTTATG GGAGCTATTG ATGTAAAAAG ACAAGCCTTA 
AATGTCTATA AAATGGAGCT TTTAGGGGCA AAAGTTCATG CAGTAGAAAG TGGAAGTAAA 
ACTTTAAGCG ATGCAGTAGA TGAGGCTTTA AAGTTTTGGG TTAAAAATAC CAAAGAAGTA 
TTTTATGTAG TAGGAAGTGC AGTGGGGCCT TATCCTTATC CACAAATTGT TACGCATTTT 
CAAAGCATTA TAGGTAAAGA ATGCAAAATA CAACTTAGAA AATTAAACAA AAAAGTAGAT 
TACATCATAG CAGCAGCTGG AGGTGGTAGC AATGCTGCTG GAATTTTTCA TGCATTTTTA 
AAAGATGAAA AAGTTAAGCT CATAGGTGTT GAAGCAGCAG GTTTAGGAAA AGATACACCT 
TATCATGCAG CCACACTTAC TAAAGGTAAA GAGGGTATTA TCCATGGTAT GAAAACTAAG 
GTTTTACAAG ATAATAAAGG AAACATTGCT CATACTTTTA GTATCTCTGC TGGGCTTGAT 
TACCCCGGCA TAGGTCCTTT GCACGCATAT TTACAAGAAA GCAAAAGAGC AAGTTATCAT 
GCTATTAGCG ATGATGAGTG TATTAATGCT TTAAAATTAT TATGTAAAGA AGAAGGTATT 
ATACCCGCTA TTGAAAGCTC ACATGCATTA GCTTATTTAG AAAAACTTTG TCCGACTTTA 
AAGAAAAAAA GTGTGATAGT TGTAAATCTT TCAGGAAGGG GTGATAAAGA TATGCAAAGT 
ATTTATGAAT ACAAAAGAGG TGAAATTTAT GGTTAG 

 

Protein sequence

MKKYYGKFGG QFVPNEVKIA LDEVEKAFLK LKKDKDFNAE LKELLANYIG RPTPLYHAKN 
LSKLYNHEIY LKREDLTHTG AHKINNAIAQ ALMAKKMNKK KIIAETGAGQ HGLATATAAA 
LLGLECEIFM GAIDVKRQAL NVYKMELLGA KVHAVESGSK TLSDAVDEAL KFWVKNTKEV 
FYVVGSAVGP YPYPQIVTHF QSIIGKECKI QLRKLNKKVD YIIAAAGGGS NAAGIFHAFL 
KDEKVKLIGV EAAGLGKDTP YHAATLTKGK EGIIHGMKTK VLQDNKGNIA HTFSISAGLD 
YPGIGPLHAY LQESKRASYH AISDDECINA LKLLCKEEGI IPAIESSHAL AYLEKLCPTL 
KKKSVIVVNL SGRGDKDMQS IYEYKRGEIY G