Gene Cla_1287 details

Gene Information

• Locus tag: Cla_1287
• Symbol: selB
• ID: 7411020
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: +
• Start bp: 1239600
• End bp: 1241405
• Gene Length: 1806 bp
• Protein Length: 601 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 643718411
• Product: selenocysteine-specific elongation factor
• Protein accession: YP_002575856
• Protein GI: 222824282
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG3276] Selenocysteine-specific translation elongation factor
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00475] selenocysteine-specific elongation factor SelB; [TIGR00485] translation elongation factor TU

Plasmid Coverage information

• Num covering plasmid clones: 44
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATAGTA TCATCATAGG CACTGCTGGA CATATTGATC ATGGTAAAAC TTCACTTATT 
AAAGCTTTAA ATGGTTTTGA GGGTGATGAT TTAAAAGAAG AACAAGAAAA AGGCATTACG 
ATTAATCTTA GCTTTTCAAA TTTAAAAAGT GAAAATTTAA ATATTGCTTT TATCGATGTA 
CCTGGACATG AAAGCTTGAT CAAAACTATG ATAAGTGGTG CTTTTGGCTT TAGAGTATGT 
ATGTTTGTCA TAGATATAAA CGAGGGTTTA AAGGCTCAAA GTATAGAGCA TTTAAGGGTT 
TTGGAATTTT TAGGGGTAAA AGATGTGGTG CTTATTTTGA GTAAGGTTGA TTTATGCAAG 
AATTTAGCAC AAAAACAAAC AGAGCTTTTA AAAGAATTAA AAACCTTTAA AATCAATATC 
TTAAAAGTTT TTCCAACTAG CATTTATGAT GAACAAAGTA TATTAAATTT AAAAAACTAT 
CTGCTTAGTT TAAAGCCTAA AGAAAATGAT GAAAATTTGA TTTTTAGATA CTACATTGAT 
AGAATTTTTT CTCTAAAAGG TATAGGAACG GTAGTAACAG GAAGCTTAAA TGAAGGAAAA 
ATCAGTAAAA ATGAAAAAAT CTTTTGCCTT GAAAATCAAA AAGATATCAT TGTAAAAAAT 
ATACAAATTC ATGAAGAAAA TGTTTTAGAA GCAAAAGCTT ATAATAGAGT TGCTTTAAGT 
TTAAACTGTG ATTATCATGA GTTAAAAAAA GGCTATGTAT TAAGCAAAAA AGGTGTTTTT 
AAAAGTTTTA AAAATATCGA TGGAGTTGTT TTTAATACAG AGATTAAACA CGGAAGTATT 
TTAGAATTTT GCAGTGGCTC AAAAAAGCTT AATGCAAAAA TTAGTGTAAT TAAAGAATTT 
GAAGATAAAA CTTATATTAG TTTAGAGTTT GATAAAAACT TACCTTTGTG TTTTGATGAT 
AAATTTATCT TGCTTGAAAA TGGGCGTATT AAAAGTGGCG GTGTGGTGTT AAATGCAGTG 
AGTGAGCCTT TAAAAAAAGA TATAAAAACT AAATATCTAG CGCTTTTAGA ACAAAAAGAT 
TTTAAAAAAG TATTTGAGTT TTTAAAACAA ACTCACAAAC TTGGCTTTGG GTTGCTTTCA 
AGCTATCAAC GCTTTAAACT CACTCATGAA CAAGCTTTAA ACTTGGCAAA AAGTTTAGAT 
CATGTTTTTG TCGATGAGCA AGCTTTAAAT ATATATGATT TAAATGCTAT GCAAACTTTG 
AAAGAATTTA TTGATTTTAT TTTCTCTAAA AATCCTTATG CTTTAATCTC GCCTCATTCT 
ATTGCCTTAA GGCTTAGCTG GGCGAGTGAG AGTTTTTGTG CTTATGTACT CAAGCAAATG 
CAAGGAAAAT TAGATTTTAA AGATGGCGTA TGGTTTTTAA AAGGACAAAA TTTTGAAAAA 
TTACAAGAAA AGGCTCATTG TGAGCTTTAT GAAATTTTAA AAAAAGAAGG TATAAAACCC 
ACTGCACCTT ACAATCTTTA TGAGTATTTA GAGCTTGATA GAAAAAACGG GGATCTTATC 
TTAAAAAAAC TCACCAAAGA AAACAAAGTC AAAAGATTAG CGCATAATCT TTTTATAGAA 
AAAAATGCCC TTGAAAATCT CATGCAAGAG TTTTTAAAGC TTTTGCAAGA TCATCATTTA 
GATGTCGCTT TTGTAAAAAA TCATTTTCAA ATTTCAAGAA AATACGCCAT AGCTTACTTA 
GAATACCTTG ATAAAAACTA TCCTCAAGTG ATAAAAATCG AGGAAAAAAG AATGCTAAAA 
GTCTAA 

 

Protein sequence

MHSIIIGTAG HIDHGKTSLI KALNGFEGDD LKEEQEKGIT INLSFSNLKS ENLNIAFIDV 
PGHESLIKTM ISGAFGFRVC MFVIDINEGL KAQSIEHLRV LEFLGVKDVV LILSKVDLCK 
NLAQKQTELL KELKTFKINI LKVFPTSIYD EQSILNLKNY LLSLKPKEND ENLIFRYYID 
RIFSLKGIGT VVTGSLNEGK ISKNEKIFCL ENQKDIIVKN IQIHEENVLE AKAYNRVALS 
LNCDYHELKK GYVLSKKGVF KSFKNIDGVV FNTEIKHGSI LEFCSGSKKL NAKISVIKEF 
EDKTYISLEF DKNLPLCFDD KFILLENGRI KSGGVVLNAV SEPLKKDIKT KYLALLEQKD 
FKKVFEFLKQ THKLGFGLLS SYQRFKLTHE QALNLAKSLD HVFVDEQALN IYDLNAMQTL 
KEFIDFIFSK NPYALISPHS IALRLSWASE SFCAYVLKQM QGKLDFKDGV WFLKGQNFEK 
LQEKAHCELY EILKKEGIKP TAPYNLYEYL ELDRKNGDLI LKKLTKENKV KRLAHNLFIE 
KNALENLMQE FLKLLQDHHL DVAFVKNHFQ ISRKYAIAYL EYLDKNYPQV IKIEEKRMLK 
V