| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_1068 |
|---|
| Symbol | pbpB |
|---|
| ID | 7410802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter lari RM2100 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012039 |
|---|
| Strand | + |
|---|
| Start bp | 1021474 |
|---|
| End bp | 1023231 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 643718194 |
|---|
| Product | penicillin-binding protein |
|---|
| Protein accession | YP_002575641 |
|---|
| Protein GI | 222824067 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTGT TTTTTATGGC CTTGTTTTTA CTTTCTACTT TTTTTCTAAC CTCAAAACGC
CATATACCAA ATACCCAAAA AGAACAATAT TTTTCCGCTC TTAGAGGTAA TATCATCACA
AGCGACAATT TCACCGTAAC TTCTAGTAGA CAAATTTATA GAGCAGAGAT TGATCTTAGA
AGCTTAAATC CTGATAAAAA AGAATTATTT TTAACACTTT TTCAAATTTA TAGCGGTGCA
AGCGATGAGC AAATGCAAGA TATCAAAAAA AGAATGCTTA CAAAGAAAAA AAGAAGTTAT
AATTTTATTT TACTTCAAGA TATTAACTCA AAAGATGCAA GTTATTTAAA GGAATTAGCT
AAAAAGCTTT ATACCCAAGG CTTTTTTAAG TCTTTTACAA ATAACAATGG CAGAGTTGAA
ACAAGAGGAC TTGATATCAT AGAACACAAA GAAGATCGTG TATATATGCC AAAAGACTCA
CTTACTCCTA TCATAGGTTA CACAAGAACT TATATGGATG AAAAAAGCGA AATTTTTAAA
AATGTCGGTA TAAAAGGCTT AGAAAAATAC TATAATGAAT GTTTAAACCC TTTACAAAAT
GCAAAAATCC AAGGTTTAAG AGATATAGGT GGCAATATTA TCTTAAATTT ACACTCTTAT
GAAAAGCGTA AAATAGATGG ATGTAATTTA TACTTAAATA TTTCACTAAA ACTTCAAAAA
GGCTTAGAAA AGGCTATTGA TAAAAGAAAT GAAGATCTAA AAGCTAATGA AATTATAGTT
GCAATTATGG AAAGTAAAAG TGGGAAAATC CTAGCCCTTG CTAGCTCAAG AAGATATGAT
CCACAAAATC GTGGAAAAGA TCTATCTGTG CTTAATGCAA GTGCGATAGA ATATGGCTAT
GAAGCAGGTT CTGTTATAAA GCCTTTTATA TTTACCACTG CTTTAATGCT TGATAAAATC
AAAGTCAATG AAATCATCAA CACCCAAGGT GGTCAATACA AGCTTGGTCG TTTTACCATA
CGCGATGATC ATATTAAAAA TAAAATGAGT ATGGAAGAAG TTATCACCTA CTCTTCAAAT
GTCGGCATGA TTAAAATCGC CCAAAGATTA AGCAATCTTG AAATCATCTC AGGACTTAGA
ATTTTTCGTT TTGGAGAAAG AAGTGGTATT GATCTTCCTT ATGAGCAAAA GGGTGAAATT
CCAAATCCAA AAAGATTAAG AGAAGTAGAA AAATCTGTAT TAAGTTATGG CTATGGCTTA
AAAACAACTT TTATGCAACT TCTAGCTGCT TATAATGTAT TTAACAATGA TGGAATTTAC
ATCACCCCAC AAATTGCAAA TAAAATTTAT CAAGATGGAC GCTTAATAAA ACTTGATGAG
GATGTTAAAA AAGAAAAAAT TCTCTCAAGT AAAGCTGCTA AAGAAATGCA ACAAATTTTA
ATCAATGTTA TAGAAAAAGG AACAGGTAAA AAAGCACAAA CTCAAGGCAT CATCATAGGT
GGTAAAACAG GTACAGCTAG GATAGCTGAA AGAAAAGGCT ATACTTCAAA TCGCTACAAT
GCTTCATTTT TTGGCTTTGC AAATGATGAG AAAAACAATT ATACCATAGG AGTTTTGGTG
AGAAATCCTA CCAAGGCTTA TAGTTATTAT GCTGCACAAA GTGCTTTACC TATGTTTAAA
GATACAGTAA ATCTTATGAT AAAAGAAAGC TATTTAAAGC CTATAGAAAA TAAAACGATA
AAAACCAATC CAAACTAA
|
|---|
| Protein sequence | MALFFMALFL LSTFFLTSKR HIPNTQKEQY FSALRGNIIT SDNFTVTSSR QIYRAEIDLR
SLNPDKKELF LTLFQIYSGA SDEQMQDIKK RMLTKKKRSY NFILLQDINS KDASYLKELA
KKLYTQGFFK SFTNNNGRVE TRGLDIIEHK EDRVYMPKDS LTPIIGYTRT YMDEKSEIFK
NVGIKGLEKY YNECLNPLQN AKIQGLRDIG GNIILNLHSY EKRKIDGCNL YLNISLKLQK
GLEKAIDKRN EDLKANEIIV AIMESKSGKI LALASSRRYD PQNRGKDLSV LNASAIEYGY
EAGSVIKPFI FTTALMLDKI KVNEIINTQG GQYKLGRFTI RDDHIKNKMS MEEVITYSSN
VGMIKIAQRL SNLEIISGLR IFRFGERSGI DLPYEQKGEI PNPKRLREVE KSVLSYGYGL
KTTFMQLLAA YNVFNNDGIY ITPQIANKIY QDGRLIKLDE DVKKEKILSS KAAKEMQQIL
INVIEKGTGK KAQTQGIIIG GKTGTARIAE RKGYTSNRYN ASFFGFANDE KNNYTIGVLV
RNPTKAYSYY AAQSALPMFK DTVNLMIKES YLKPIENKTI KTNPN
|
|---|
| |