Gene Cla_0949 details

Gene Information

• Locus tag: Cla_0949
• Symbol: rnr
• ID: 7410529
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: +
• Start bp: 909031
• End bp: 910971
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 643718077
• Product: ribonuclease R
• Protein accession: YP_002575524
• Protein GI: 222823950
• COG category: [K] Transcription
• COG ID: [COG0557] Exoribonuclease R
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases; [TIGR02063] ribonuclease R

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGAAT TATTTAATCA ACTAAGTTAT GGTCTAAATG CTAATGAAAT TACCAATAAA 
AACAAGCAAA TAATTAGAGA ATTATTAACT TGTGATATTA TTAAATTTTA TAAAAACAAA 
TACTATTTAA AAGATGGCTT TACTTTTGGT AAGATTGATA TTTCAGCTAA TGGAACGGGA 
TTTTTAGAAA GTTTTGATCC TGCTTTTAAG CGTGATTTGC TCATAGAAAA TAAAAATTTA 
AAAGGAGCAA ATTATGCTGA TATAGTTGTG GCAAAATTAC TTCCTCTTAA AAAAAAGCGT 
CCAAGTGCTA AAGTTATCTT AATACTTAAA AGAGCCCATG AAACTTCTTT GGTTATAACT 
AAAAAATACG GCGAAGCAGT CCTTGGAGTA AATATTCAAA CAGGACTTAC ATGTGCCTTA 
AAAGCCTCTC AAAAATCCTT AAAAACACTG CCTTTAGGAA CTATTTTAAA AATAGAAAAT 
CATGATAATA ATATCACTGA AGTGATAGGG CATATTGATG ATGATTTTGT AGATGAGAAA 
ATTTCTCTTG CTTTATATAA TAAAAACTCT ATTTTTGATA CCTTGTGTGA AAATGAAGCA 
AAAGCTTATG GAGATAAGGT TGATGTGAGT ATGTATCCAT CAAGAAAAGA TCTTAGAAAT 
TTAAATTTTT GCACTATTGA TCCAATTGAT GCAAAAGATT TTGATGATGC GATATTTTAT 
GATAAAAACG AACACGTAAT TTACGTAGCC ATAGCTGATG TAAGTGCTTA TGTGCATGCT 
TATAGTGCTA TTGATAAAGA AGCAAGATCT AGGGGATTTT CTATTTATTT TCCTCATATT 
GCCATACCTA TGTTGCCAAG AGCTTTGAGT GAAAATATTT GCTCACTAAA GCCCAATGAA 
GATAGGTTAG CATTTTGTTT TAAAATAAGC TTAGATCAAA ATAATGAAGT GATTAAAGAA 
GAGCTTTTTG AGGCTATTAT TAACTCAAAA CGCCGTTTTA ATTACGATGA AGTTGATGAG 
TATTTACAAA CACAAGAAGA TTTAGGTGCG ATTAATTGGC TTTATGAAGT TTTTAAAATC 
ACTCAAAATT TACGAAAAAA ACGATTAAAA AATGCTTGTG AGTTTAAAAC CCAAGAGCTA 
AGAATGACTT TAGATGAAAA TAATAAACTC ATAAAAACAC GCCTTGAAAA TGACACAGCC 
TCGCATAATT TAATCGAAGA TTGCATGCTT TTAGCTAATA AAGCTGCAGC AAAACTCATT 
GATATAGGAG TTTTTAGGAA TCATTTAAGT CCTGATTATA AAAAAATAGA TCAATTATTA 
GCCGATCTTT CAACGCTTAG TATAGATATT AATCCTAAAA ATAATGTCAT AGAATTATTT 
AAAGACATTC AAGTCTTAGC AAATGAGCTA AATATAAGAG AAGAAGTAGA TAAACTCATC 
ATCAAGGCAC AAAAAAAGGC AGAATATTCT AGTGAAAATG CAGGACATTT TGGCTTGGGT 
TTTGACAAAT ACACTCATTT TACAAGCCCT ATTAGAAGGT ATTCTGATCT TATTTTACAT 
AGACTTTTAA AGGCTAAAAT TAATCATGAT GAAAAAATGT TTAATTATTT GCTTTTAAAT 
ATTCAAAGCA CTTGTGAGGA ATTAAGCTTA TTAGAAAGAG AAGCAGATAA AGTCTCGTGG 
AATTTTATGG ATAGAAAATT TGCAAGATGG GCAAAGGAAA ATATAGGAAA AAGATTTAAA 
GCTATAGTCA TTGAAAATCA AAGCTCATTG CAAGTTAAAC TTGATGATGA TATTAAGGGA 
GCTTTAATTA ACATCATTGG CTCAAGGGCA AATTTATTAG AAAATGTAGA AGTAGAAATC 
ACTGAAGTGG ATATTGTTAG TGCCAAAATT TTTGGAAAAA TCACCAAGCA TTTTAGCTTA 
GAAAGAAATC AAAATGTATA A 

 

Protein sequence

MKELFNQLSY GLNANEITNK NKQIIRELLT CDIIKFYKNK YYLKDGFTFG KIDISANGTG 
FLESFDPAFK RDLLIENKNL KGANYADIVV AKLLPLKKKR PSAKVILILK RAHETSLVIT 
KKYGEAVLGV NIQTGLTCAL KASQKSLKTL PLGTILKIEN HDNNITEVIG HIDDDFVDEK 
ISLALYNKNS IFDTLCENEA KAYGDKVDVS MYPSRKDLRN LNFCTIDPID AKDFDDAIFY 
DKNEHVIYVA IADVSAYVHA YSAIDKEARS RGFSIYFPHI AIPMLPRALS ENICSLKPNE 
DRLAFCFKIS LDQNNEVIKE ELFEAIINSK RRFNYDEVDE YLQTQEDLGA INWLYEVFKI 
TQNLRKKRLK NACEFKTQEL RMTLDENNKL IKTRLENDTA SHNLIEDCML LANKAAAKLI 
DIGVFRNHLS PDYKKIDQLL ADLSTLSIDI NPKNNVIELF KDIQVLANEL NIREEVDKLI 
IKAQKKAEYS SENAGHFGLG FDKYTHFTSP IRRYSDLILH RLLKAKINHD EKMFNYLLLN 
IQSTCEELSL LEREADKVSW NFMDRKFARW AKENIGKRFK AIVIENQSSL QVKLDDDIKG 
ALINIIGSRA NLLENVEVEI TEVDIVSAKI FGKITKHFSL ERNQNV