| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_0500 |
|---|
| Symbol | nhaD |
|---|
| ID | 7411060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter lari RM2100 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012039 |
|---|
| Strand | + |
|---|
| Start bp | 475356 |
|---|
| End bp | 476714 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 643717631 |
|---|
| Product | Na+/H+ antiporter |
|---|
| Protein accession | YP_002575099 |
|---|
| Protein GI | 222823525 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1055] Na+/H+ antiporter NhaD and related arsenite permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA TGCTTTTTTT GCTTTGTTTT GGTGTTAGTT TTTTGTTTGC CAGCCAAACG
CATGAGCTAA ATTTAGCTTT TAGTGCTTTA GGTATAGGCA TTTTAATAAT TTTTATATTA
GGTTATTATT TTATAGCAGC AGAAGAGAAA TATCATATCA ATAAAACTAA GCCTGCTTTA
TTTATAGGTA CTTTATCTTT TGTTATCATA GGCATATATA TGGTAATGAA TGATCTAGAC
ACACAAATAC TTGAAGAAAG TGTAAATCAT CTTATTTTAG AAATTGCGCA AATTGTCTTT
TTCTTAATAG CTGCTATGAC TTTTATAGAA GCGTTGATAG AAAGATCGGT TTTTGAAACT
TTAAAATACA AACTTGTAAG TAAAGGTTAT ACATATAGGA AGTTATTTTG GCTAACAGGT
ATTTTGGCTT TTTTTATTTC CCCGATCGCA GATAATCTTA CAACTGCTTT GATTTTATCT
ACTGTGCTGT TAACTATAGA TAAAGATAAA AAAGAATTTT TAATACCAGG AGCTATTAAT
ATAGTAGTCG CTGCTAATGC AGGAGGTGCT TGGTCGCCAT TTGGCGATAT TACCACTTTG
ATGGTTTGGA CAGCTAAAAA AGCAACTTTT TTTCAATTTT TTGCTCTTTT TCCTGCTTCT
TTTATTGGTT GGTTGCTTAC TGCTTATTTA TTATCGCGTT ATGTGCCTAA TGTTAAGCCA
AATTTTCACA AAGATAATTT AGAAAAAGTT GAGATTAAAC CAGGTGGTAA AGTTTTTATT
GTACTTGGTT TTTTAACTAT AGCTTTGGCG GTATTTATTC ATAGTATTTG TGATTTACCT
GCAATGTGGG GTATGATTTT TGGACTTTCA TTGCTTAGTT TGTATATGTA TTTTTTCAAT
AGAAAACAAG GCAAAAAAGA TTTAAATATT TTTCATTATA TGACGCATAT TGAAATGGAT
ACTTTATTAT TTTTCTTTGG TATTTTATCT GCTGTAGGTG CTTTACATTT TGTTGGTTGG
CTTGCATATG CTTCTGATCT TTATGCAAAA TTTGGAGCTA CTAGTATTAA TATAGGGGTA
GGATTTTTAT CTGCTATTGT AGATAATGTT CCAGTTATGA GTGCGGTATT AAAGGCAAAT
CCAAGTATGG ATGATACTCA ATGGCTTTTA GTAACTCTTA CAGCAGGAAT AGGGGGATCA
TTGATAAGCT TTGGTTCAGC TGCTGGAGTA GGAGTAATGG GTAAAATGAA GGGAATTTAT
ACTTTTAATG CTCATTTAAA ATATGCATGG ACGATTTTGG TTGGTTATAT AATATCTATT
ATGGTTTGGT ATGTACAATT TCAATTGTTA AATTTGTAA
|
|---|
| Protein sequence | MSKMLFLLCF GVSFLFASQT HELNLAFSAL GIGILIIFIL GYYFIAAEEK YHINKTKPAL
FIGTLSFVII GIYMVMNDLD TQILEESVNH LILEIAQIVF FLIAAMTFIE ALIERSVFET
LKYKLVSKGY TYRKLFWLTG ILAFFISPIA DNLTTALILS TVLLTIDKDK KEFLIPGAIN
IVVAANAGGA WSPFGDITTL MVWTAKKATF FQFFALFPAS FIGWLLTAYL LSRYVPNVKP
NFHKDNLEKV EIKPGGKVFI VLGFLTIALA VFIHSICDLP AMWGMIFGLS LLSLYMYFFN
RKQGKKDLNI FHYMTHIEMD TLLFFFGILS AVGALHFVGW LAYASDLYAK FGATSINIGV
GFLSAIVDNV PVMSAVLKAN PSMDDTQWLL VTLTAGIGGS LISFGSAAGV GVMGKMKGIY
TFNAHLKYAW TILVGYIISI MVWYVQFQLL NL
|
|---|
| |