Gene Athe_1854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAthe_1854 
Symbol 
ID7408967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnaerocellum thermophilum DSM 6725 
KingdomBacteria 
Replicon accessionNC_012034 
Strand
Start bp1932088 
End bp1933470 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content39% 
IMG OID643716226 
ProductPectate lyase 
Protein accessionYP_002573715 
Protein GI222529833 
COG category[R] General function prediction only 
COG ID[COG3889] Predicted solute binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAAAT CTAAGAATAA AAAAGAGGAG GTTTGGGTGA TGAGTAACAG GAAGATTTTA 
GCCATTGTAG TCAGTTTGAT AATGGTTGTT TCATTGTTTA CAGGGATTGG GTTGCGTAAT
GAAGTTGCAA AGGCAGCGAC ACTTTTAACA GATGATTTTG AAGATGGCAA CAGAGATGGA
TGGTCGACAT CGAACGGTAG TTGGAGTGTA GTAGTGGATG GGAGCAAGGT TTTAAAGCAG
GCTAGCACAG GTTCTGAGGC GAGAGCATAT ACTGGTTCAT CTGATTGGAG TGATTATACA
GTTGAAGCGA AAGTTAAAGT ATTAAATGTG AAGGATTCGA GTTCAGGTGC GGGAGTGATA
GTGAGATATA AAAACTCAGG TAACTTTTAT GCGTTGGTGC TAAGGGGTTC AAAGATAGAA
ATAGGGAAGA AATTAAACAG TAACTGGAGT ACATTGGCGT TCAAGTCATT TACGTTGGAT
CAGGATACCT GGTATAATGT GAAATTAGAA GTAAATGGGA GCAAGTTAGT TGGATATGTT
AATGGGAGTC AAGTATTAAG TGCAAGTGAT TTATCGATTA CGACAGGAAA AGCAGGTTTA
ATAGCTGACA GGTGTGTTGC TGAATTTGAT GATGTTGTTG TAAATTCAAG TGTGAGCGGT
ACAGCACCTA CTCCGACACC AACACCGACT TCATCAGTGA CACCAACACC GACATCGACT
CCAACGCCAA CCAAAACACC TACTCCAACT TCCACACCAG TACCAACACA GACCCCAGCA
GTAACACCGA CGCCGACCCC AAATACGGGT GGTGTTTTAG TTATTACAGA TACAATAATT
GTAAAATCCG GTCAAACATA TGATGGTAAA GGAATAAAAA TAATAGCTCA AGGAATGGGT
GACGGAAGTC AATCTGAAAA TCAAAAGCCC ATATTTAAAC TTGAAAAAGG GGCAAATTTG
AAAAATGTAA TAATTGGAGC GCCAGGTTGT GACGGGATAC ATTGTTATGG TGATAATGTG
GTTGAAAATG TTGTATGGGA AGATGTTGGA GAGGATGCGT TGACTGTAAA AAGTGAGGGG
GTAGTGGAAG TTATTGGTGG TTCAGCAAAA GAAGCTGCTG ACAAGGTGTT CCAACTTAAT
GCACCGTGTA CATTCAAAGT AAAAAACTTC ACAGCTACAA ATATAGGAAA GCTTGTAAGA
CAAAATGGTA ATACTACTTT CAAAGTAGTT ATTTATCTTG AAGATGTAAC ATTAAACAAT
GTAAAAAGCT GTGTTGCAAA ATCTGATAGT CCAGTATCAG AACTGTGGTA TCATAACTTG
AATGTAAACA ATTGTAAAAC ATTATTTGAA TTTCCGTCCC AATCACAGAT ACATCAATAC
TAA
 
Protein sequence
MIKSKNKKEE VWVMSNRKIL AIVVSLIMVV SLFTGIGLRN EVAKAATLLT DDFEDGNRDG 
WSTSNGSWSV VVDGSKVLKQ ASTGSEARAY TGSSDWSDYT VEAKVKVLNV KDSSSGAGVI
VRYKNSGNFY ALVLRGSKIE IGKKLNSNWS TLAFKSFTLD QDTWYNVKLE VNGSKLVGYV
NGSQVLSASD LSITTGKAGL IADRCVAEFD DVVVNSSVSG TAPTPTPTPT SSVTPTPTST
PTPTKTPTPT STPVPTQTPA VTPTPTPNTG GVLVITDTII VKSGQTYDGK GIKIIAQGMG
DGSQSENQKP IFKLEKGANL KNVIIGAPGC DGIHCYGDNV VENVVWEDVG EDALTVKSEG
VVEVIGGSAK EAADKVFQLN APCTFKVKNF TATNIGKLVR QNGNTTFKVV IYLEDVTLNN
VKSCVAKSDS PVSELWYHNL NVNNCKTLFE FPSQSQIHQY