| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_2682 |
|---|
| Symbol | |
|---|
| ID | 7400889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 2669892 |
|---|
| End bp | 2671721 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643709756 |
|---|
| Product | conserved repeat domain protein |
|---|
| Protein accession | YP_002567323 |
|---|
| Protein GI | 222481086 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1361] S-layer domain |
|---|
| TIGRFAM ID | [TIGR01451] conserved repeat domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.549235 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTA TCCGGAAGAT CGCGGTCGTC GCGCTTGTCT GCTGTCTGCT AGTGGCCGGC
ACCGCGCTGG TCGCGGCCAA CGACACGGTC AGCGGCGATC CCGACATCGA GGCGTTCGCG
CCCGAGACGG CGTTCGTTCC CGGCGAGGAG TCGACGCTGC AGGTGAGTCT GAACAACCGC
GGCGACGTGA GCGAGGAGGG GTTCGACGAC CTCGAAAGCG AGGTGGTGAC CGCCCACGAG
ACCACCGCGC GGATCCTCTC CGGCGACGAG ACCAACCGCG ACGTTCCGTT CGACGTGCGC
ACCGGCGAAC AGACGGTGGG CGACGTGCCT CGGGGCGTCA CCGGTCCGAT CGACTTCACC
GTCGTCCCCG ACGAGGACGC GGAACCGGGC GTCTACCAGG TCCCGATCCG ACTGGAGTAC
CGGAACGTCT ACAACGCCGA GGACGACAAC GGCGCGACCC TCCGCGACGA GCGCGTCGAG
ACCGAGACCG TGGTCGTCGA CGTCGAGATA ACCGACCGCG CGCAGTTCGC GGTCACCGCC
GTCGACGGCG CGGTCCAAGC CGGCGACACC GGCGTCGTCG ACGTGACGAT GCGAAACGTC
CAGAACGAAA CCGCCCGCGA GGCGTCGGTG GCGGCGACCC CGGTCGACCC TGATCTCACC
TTCACCACCG AGGCCGGCAC CACCGAGACG TACGTCGACG ACTGGGCGCC CGGCGAGAAC
CGCACCTTCA CCTACCGGTT CGACGCCGCC GCCGACGCGA CGCCACGGGC TTCGACGCTG
GAGTTCGACG TGGAGTACCG AGACGCCGAG CGTGCGGACG CTACCGCCCG AACGGTTCGG
ACCGGCGTGA CCCCGCTCTC GCGGCAGGCG TTCGACGTGA CCGGCCTCAA CAGTTCGCTG
GAGGTCGGCA AGGACGGCTC GTTCACGGTC GCGGTCCGCA ACGACGGCCC GCGTCCGGTG
GAGAACGCCG TCGTCGCCTT CGACAACGAG GCGCCGGCGC CGGAGGGGGT CGGGGCGGAC
ACGATTCCGA CCGACGAGAA CGTCGTCCCC CGCGAGACGC GGGTGACCGT CGGCGACCTC
GGGGTCGGCG AGACCGCGAC GGCGACGTTC GACGCCGGGA TCCGCACCGA CGCAACCCCG
GGCAATCGGA CGCTCAACCT CGTCGTGCGC TATCGCGGGC TCGACGACGA CGTGGTCGTC
TCCGACGCGT ACGACGCCGT CGTCGATGTG CGCCCGGAAC AGGAGACCTT CGCCGTCTCA
CCGGTCGAAC CGCGTGTCGA CGAGGACGGT GCGGGCGGTA ACGAGACCGG CAGTGACGGT
AACGGGACTG ACGAGGGCGA CAACAGAACC GCCGCCGTCG CCGGCGCCGC GACCGGAATC
GCGCCGGGTG AGACCGCCCG GTACGACGTG GTCGTTCGTA ACACGGGCTC CGAGCCGGTC
TCGGACGTGC AGGCGAAGCT GTTCGTGGAC GAGCCGATCT CCTCGGACGA CGACGAGGCG
TTCGTCACGT CGCTGGATCC GGGCGAGGAG ACGACCCTGC GCTTCGAAGT AAGCGCTGAC
GGCGGGGCCG CGCCGAAGAC GTACTCCGCC GCGGTCGACT TCCGGTACGA CGACGCCGAG
GGCGACGAGC AGCTCTCGGA CACCTACCGG CTCCCCGTCG AGGTCGCCAC CGACGACGGT
GGCAGCGTGC TCCGGTCACC GGTCGGAATC GTCGCCCTGC TGAGCGCCCT TGCGATCGGC
GCCGCGGCGG TCTGGAAGCG CGGCCGGGTG AGCCGAGCGA TCTCGCGGTT CCGCCGGCGG
GCCCGCGACC GGTTCGGCGG CAACCGGTAG
|
|---|
| Protein sequence | MSRIRKIAVV ALVCCLLVAG TALVAANDTV SGDPDIEAFA PETAFVPGEE STLQVSLNNR
GDVSEEGFDD LESEVVTAHE TTARILSGDE TNRDVPFDVR TGEQTVGDVP RGVTGPIDFT
VVPDEDAEPG VYQVPIRLEY RNVYNAEDDN GATLRDERVE TETVVVDVEI TDRAQFAVTA
VDGAVQAGDT GVVDVTMRNV QNETAREASV AATPVDPDLT FTTEAGTTET YVDDWAPGEN
RTFTYRFDAA ADATPRASTL EFDVEYRDAE RADATARTVR TGVTPLSRQA FDVTGLNSSL
EVGKDGSFTV AVRNDGPRPV ENAVVAFDNE APAPEGVGAD TIPTDENVVP RETRVTVGDL
GVGETATATF DAGIRTDATP GNRTLNLVVR YRGLDDDVVV SDAYDAVVDV RPEQETFAVS
PVEPRVDEDG AGGNETGSDG NGTDEGDNRT AAVAGAATGI APGETARYDV VVRNTGSEPV
SDVQAKLFVD EPISSDDDEA FVTSLDPGEE TTLRFEVSAD GGAAPKTYSA AVDFRYDDAE
GDEQLSDTYR LPVEVATDDG GSVLRSPVGI VALLSALAIG AAAVWKRGRV SRAISRFRRR
ARDRFGGNR
|
|---|
| |