| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_2645 |
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| Symbol | ligA |
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| ID | 7400850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorubrum lacusprofundi ATCC 49239 |
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| Kingdom | Archaea |
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| Replicon accession | NC_012029 |
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| Strand | - |
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| Start bp | 2628061 |
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| End bp | 2630193 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643709717 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_002567286 |
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| Protein GI | 222481049 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGTT CGTCGCCCCG GCACGCGGAT CCGGACGAGA ACCCCTACGT CGAGGCGCCG
CCGACCGACT TCGAACCGGT CGGAGCGCTC TCCGAAGACG AAGCCACAGA GCAGGCGTCG
CTGCTCCGGG CGGCGATCCG CGAGCACGAC CACCGGTACT ACCTGGAGGC CGACCCCCTG
ATTCCCGACG AGACGTACGA CCGGCTGTTC ACGCGGTTGC AAGAACTGGA GAACGAGTTC
GACCTCCCGA CCCAGAACTC CCCCACGCGC CGGGTCGGCG GCGAGCCGCT CGACGAACTG
GCGACTGTCG AACACGTCGC GCCGATGCGC TCCATCGACA ACGCGACCGA GGCCGACGCC
GTCCGCGAGT TCGACGGGCG CGTCCGGAAG GGGCTCGACG CCGAGGGGTT CGACTCGGAC
GCGGTCGAGT ACGTCTGCGA GCCGAAGTTC GACGGCCTCT CCGTCGAGGT GATTTACGAG
GACGGCGAAT ACGTTCGCGC CGCCACTCGT GGCGACGGGA CCGCAGGCGA CGACGTGACC
GAGCAGGTCC GGACCATCCG ATCTGTCCCC GGGAAGCTTC GGGGTGACCC ACCGAGCCGG
CTCGCGGTCC GCGGCGAGGC CTACATGCCC CGCGACGCCT TCAAGGCGTA CAACGAGGCG
TTGATGGAGC GCGGCGAGGA GCCGTTCGCG AACCCACGCA ACGCCGCCGC CGGCACCCTC
CGCCAACTCG ACCCGTCGGT CGTCGCAGAG CGTCCCCTCG ATATCTTCTT CTTCGACGTG
TTGGGGTGGG AAAACGACGC AGAGGGAGAC TCCCCCAACC GTCCCGCCAC CCACTGGGAA
GAGTTCGACA CGTTCGACGC GTTCGGACTT CGACGCGCCA ACCGGGTCGA GCGCGTCGAC
GACATCGAGG GCGCGCTCGA CTACCGCGAC CGACTCATGG CCGACCGCGA GGACCTGAAC
TTCGCGATCG ACGGGGTCGT GATCGCCGTC GACGACCGCG CGAACCGCGA GGCGCTCGGG
GCGACCGCGC GGGCGCCGCG CTGGGCGTTC GCGTACAAGT TCCCGCCCCG GACTGCGACG
ACGATCGTCG AGGGGATCAC GGTGCAGGTG GGTCGGACGG GCCGGCTCAC TCCCGTCGCG
GAGCTGGACC CGATCGACGT GGGTGGCGTC ACCGTCTCGC GGGCAACTCT GCACAACCCC
GCCGAGATCG AGGCGCTCGG CGTGAACGTC GGCGACTGCG TTCGGATCTA CCGCGCCGGC
GACGTGATCC CCTACGTCCC CGAGGTGGTC GAGAAGCGCT CCGAGGGGAC CTACGTCTTC
CCCGAGACGT GTCCGATCTG TGACGCCCCC GTCGAGCGCG ACGGGCCGCT CGCGTTCTGT
ACCGGCGGGC TCGTCTGTCC GGCACAGCTG GAACGGGCGG TCGAACACTG GGCGCGACGG
GACGCGCTCG ACATCGAGGG GCTCGGCCCG GAGCGCGTCC AACAGCTCCG GGAGGCCGGC
CTCGTCGAGT CGCTGCCGGA CCTGTACGAT CTGGCCGTCG ACGACCTCGC CGCGCTGGAG
GGGTGGGGCG AGACGAGCGC CGAGAACCTG ATCGCGGAGC TCGCGGCGAC CCGCGACCCG
CCGCTCGACG ACTTCCTCGC CGGCCTCGGG ATCCCGGACG TGGGCGCGAC GACCGCCCGG
GCGTTGGCGG CGCACTTCGG CGACCTCGAC GCGATTCTCG ACGCCGACGA GGACGCGCTT
CGCGCGGTCG ACGACGTGGG GCCCGAAGTG GCCGAATCCA TCCGGACGTT CCTCGACAAC
GCGGAGAATC GGGTGGCGAT CGATGGGCTC CGCGAGCGCG GGGTCGATCC CGAATCGGTC
GACGTCGAAA CCGGCGACGC GCTCGACGGA CTGACTTTCG TGTTTACCGG GTCGCTGTCG
ACGACCCGGG GCGAGGCGCA GGCGCACGTG GAGGCGCACG GCGCCGACGC CACGTCGAGC
GTCTCGGGGA ACACCGACTA CCTCGTCGCC GGCGAGAGTC CGGGACGCTC GAAGCGCGAC
GACGCCGACG CGGAGGGCGT GCCCGTGGTC GATGAGGAGG AGTTCGCCGG TCTCCTCGCC
GAGCGCGGGG TCGCGTGGCC GCCCGAGGAG TAG
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| Protein sequence | MTSSSPRHAD PDENPYVEAP PTDFEPVGAL SEDEATEQAS LLRAAIREHD HRYYLEADPL
IPDETYDRLF TRLQELENEF DLPTQNSPTR RVGGEPLDEL ATVEHVAPMR SIDNATEADA
VREFDGRVRK GLDAEGFDSD AVEYVCEPKF DGLSVEVIYE DGEYVRAATR GDGTAGDDVT
EQVRTIRSVP GKLRGDPPSR LAVRGEAYMP RDAFKAYNEA LMERGEEPFA NPRNAAAGTL
RQLDPSVVAE RPLDIFFFDV LGWENDAEGD SPNRPATHWE EFDTFDAFGL RRANRVERVD
DIEGALDYRD RLMADREDLN FAIDGVVIAV DDRANREALG ATARAPRWAF AYKFPPRTAT
TIVEGITVQV GRTGRLTPVA ELDPIDVGGV TVSRATLHNP AEIEALGVNV GDCVRIYRAG
DVIPYVPEVV EKRSEGTYVF PETCPICDAP VERDGPLAFC TGGLVCPAQL ERAVEHWARR
DALDIEGLGP ERVQQLREAG LVESLPDLYD LAVDDLAALE GWGETSAENL IAELAATRDP
PLDDFLAGLG IPDVGATTAR ALAAHFGDLD AILDADEDAL RAVDDVGPEV AESIRTFLDN
AENRVAIDGL RERGVDPESV DVETGDALDG LTFVFTGSLS TTRGEAQAHV EAHGADATSS
VSGNTDYLVA GESPGRSKRD DADAEGVPVV DEEEFAGLLA ERGVAWPPEE
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