| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_2604 |
|---|
| Symbol | |
|---|
| ID | 7399830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 2581499 |
|---|
| End bp | 2583496 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643709676 |
|---|
| Product | DNA mismatch repair protein MutS domain protein |
|---|
| Protein accession | YP_002567245 |
|---|
| Protein GI | 222481008 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1193] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0194376 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.689485 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTGG AGGCGATCCC CGGCGTCGGC GCGAAGACGG CCGCGGCGTT GCACGAGCTC
GACGACCCGG TCGCGACCGT CGAGTCCGGC GACGTCGCCG CGATCGCCCG CGCGCCCGGT
GTCAACGAGG CGCGCGCGGC CCGCATCGCT CGCGGAGCGA TCCGTCGCCG ACACGACGAC
GACGGGCGCG TGCTGGCGAC CGACCGCGCC CGCGAGGTGT ACCGCTCGGC GATCGACCTG
CTGCGCGAGC GCACCGTCAC CGACTACGCC GCCAAGCGGC TGGAGACGTT CTACCCGAGC
GAATCGACCT CGCGGATCGC GGAGGCGCAG GCGTTCGTCG AGGGGGCGAT GGAGCGCGAG
CCCGATCCCG CCGTCCACGA GGCGCTCGCC GGGGTCAAAC CCCTGATCGA CCCGCCGACG
GTTCGAGTGC GCGACCGCTG TCTCGCGACG GCCGACGCCG AGGCGCTCGC CCGCGCCGAG
TCGGCGGTGC CGGAGCTGTC GGTCGAGACC GTCGAGAACG CCCGTGACAT CTCGGAACTC
GCGCGGTCGT ACGCGACCGT GATCGTCTTA GACGAATCGT TCGCCGGACT CGACGTCGAG
GGTGACGTAC ACGTCCGCCC GGATGCGTTG GACAAGCCCG CGGAGACCGT CCCCGAGCGT
CTGCTCGCCT TCTTCGCGGC GAACCGCGAG CGACTGGAAG CGGCCGCGGC GGTCCACGAG
ACGGCGAACC TCTCCCCCGC GGCCGACCTC GACCGCCTCC GCGACGCCCT CGCGCGGCTC
GACGACGACG GGACGGTCGT CGGCGACGGG GAGCTCGAAC GACTGACCGC CGCCGTCGAC
GACCTCGATG CCGCGGTGTC GACGGCGGAG TCAGTGGCCG ACGACCGGCT CAGAGAGGCG
ATCCGCGAGC GCGACGTGAC CATCGAGGGG ACCGACTTCC TCTCGCTGGT CGAGCAGGGC
GCCCGGGTCG ACTCGCTCTT AGACCGCGAG CTGGCCGACG AGTACGACGC GGCGATGGCC
CGCGCTCGCG AGCACCTCGC GGACGCGCTC CGCTTGGAGC CCGAGGAGGC GGAACTCGCC
GACCGGGTGT TCGGCGACGA CCCCTCTTTC CCGGTCGAGC ACGATGAGAG CGCGGTCTCG
CGGCTCCGCA CCGAGCTTGC GGCGGCGCGC GACCGCCGGG CTGCCCGCCT GAAGGCGGAA
CTCGCGAGCG ACCTCGGCGA CCTGCGGGAG CCCGTGGAGG AACTCGTCCG GGACGCCCTC
GAACTCGACG TGGAACTGGC GATCGCGCGA TTCGCGCGCG ACTTCGACTG CGTCATGCCC
GAGGTGGTTG ATTCGGACGG GGACGGCTCT CCCGGACCCT CCGGCTTTCG GATTGTGGGC
GGCCGCTCCT CACTTCTCGA CGTTGATTTC GAGAACGTGG AGCCGATCGA CTACGCGGTG
TCGGGCGCGA CGCTCCTCTC GGGAGTCAAC TCCGGCGGGA AGACCTCGAC CCTCGATCTC
GTGGCGCTCG TCGTCGTCCT CGCGCAGATG GGGATGCCCG TCCCCGCCGA GTCCGCCACC
GTCGAGCGCT TCGAGGAGAT CCACTACTAC GCCAAATCGC AGGGAACCCT CGACGCGGGC
GCGTTCGAGG CGACCCTGCG GGACTTCGGC GACCTCGTCG AGGGCGCGGA CGGGCGGCTC
GTCTTGGTCG ACGAGCTTGA GTCGATCACG GAGCCGGGCG CCTCCGCGAA GATCATCGCG
GGCATCCTCG AAGCGCTCGA CGAGCAGGAC GCCACCGCCG TCTTCGTCTC CCACCTGGCC
CGCGAGATCC GGGACGCGGC CGACTTCGAA GTCGCCGTCG ACGGAATCGA GGCCGCCGGG
CTCGTCGACG GCGAGCTACG GGTGAATCGC TCACCGCGGA AGGGTCACCT CGCGCGGTCG
ACCCCGGAGC TCATCGTCGA GAAGCTCGCG GGCGACCGCG ACACCGACTT CTACGGGGAC
TTACTGGAGA AGTTCTGA
|
|---|
| Protein sequence | MELEAIPGVG AKTAAALHEL DDPVATVESG DVAAIARAPG VNEARAARIA RGAIRRRHDD
DGRVLATDRA REVYRSAIDL LRERTVTDYA AKRLETFYPS ESTSRIAEAQ AFVEGAMERE
PDPAVHEALA GVKPLIDPPT VRVRDRCLAT ADAEALARAE SAVPELSVET VENARDISEL
ARSYATVIVL DESFAGLDVE GDVHVRPDAL DKPAETVPER LLAFFAANRE RLEAAAAVHE
TANLSPAADL DRLRDALARL DDDGTVVGDG ELERLTAAVD DLDAAVSTAE SVADDRLREA
IRERDVTIEG TDFLSLVEQG ARVDSLLDRE LADEYDAAMA RAREHLADAL RLEPEEAELA
DRVFGDDPSF PVEHDESAVS RLRTELAAAR DRRAARLKAE LASDLGDLRE PVEELVRDAL
ELDVELAIAR FARDFDCVMP EVVDSDGDGS PGPSGFRIVG GRSSLLDVDF ENVEPIDYAV
SGATLLSGVN SGGKTSTLDL VALVVVLAQM GMPVPAESAT VERFEEIHYY AKSQGTLDAG
AFEATLRDFG DLVEGADGRL VLVDELESIT EPGASAKIIA GILEALDEQD ATAVFVSHLA
REIRDAADFE VAVDGIEAAG LVDGELRVNR SPRKGHLARS TPELIVEKLA GDRDTDFYGD
LLEKF
|
|---|
| |