Gene Hlac_2000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_2000 
Symbol 
ID7402019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp1994833 
End bp1995483 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content70% 
IMG OID643709071 
Producthypothetical protein 
Protein accessionYP_002566648 
Protein GI222480411 
COG category[R] General function prediction only 
COG ID[COG2945] Predicted hydrolase of the alpha/beta superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0268912 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.270063 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGAAA CCGTTCTCAT TCCCGGCGGC CGCGACGTGC GCGCCACCCT CGACACCGCC 
GCGAGCGACG GCGGTGGCGA CGCCACCGGG AACGGGTCCC GGGCCGACGC GGTCGTCGTC
GCCTGCCCGC CGCACCCCCA ACAGCGCGGC CACCGCGGCG ACGAGCGCCT GACCGCCGTC
AGCAACGCGC TGACCGATCG GGGGATCGAC TGCCTTCGGT TCGACTACGG TGACTGGGAC
GAAGGATACG GCGAGAGCAC TGACGCCGAC AACACGGTCG GCTGGGCGGT CGAGCGGTAC
GAGCGCGTCG GGCTGTTCGG CTTCTCGTTC GGGGGGACGG TCGCGCTCGT CACGGCGGCG
TCCCGCCCCG GACTCGCCGG GGTCTGCGCG CTCGCGCCGA CCGCGCGACT GAACCCCGAC
GTGGACGCAG TTGCGGTCCT CGACGATCTT ATCGATCTCA GCGTGCCAAC GCGGATCCTG
TACGCGACCC GCGACTCGAC GGCCGACTGG GAGCCCGTGG TGGAGCGGGC CAAGGAGTTG
GGAATCGAGA CGATCGGATT CGAGTCCGAC CACTTCTTCG TCGGGCGGGC AGGTGATGTG
GGGGAGGAAG TGGGGGCGTT TTTCGGGCCG CGACTAGAGG ACAGTTTATA A
 
Protein sequence
MSETVLIPGG RDVRATLDTA ASDGGGDATG NGSRADAVVV ACPPHPQQRG HRGDERLTAV 
SNALTDRGID CLRFDYGDWD EGYGESTDAD NTVGWAVERY ERVGLFGFSF GGTVALVTAA
SRPGLAGVCA LAPTARLNPD VDAVAVLDDL IDLSVPTRIL YATRDSTADW EPVVERAKEL
GIETIGFESD HFFVGRAGDV GEEVGAFFGP RLEDSL