| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1443 |
|---|
| Symbol | |
|---|
| ID | 7400270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1453451 |
|---|
| End bp | 1454386 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643708504 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_002566101 |
|---|
| Protein GI | 222479864 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3264] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCCTC ACACCCCTCC GTGTCGCCTG TGGGGATGGT CCGTCTTCCC AGCGGCCCCA
GCGGTTGTCC GAGCGACGAC GCCGGAACCG GAGGTCGGTC CCACGGAGCT CTTCGAGTAC
TGGCCGGTGG TCGTCCGTCT CGGCTGGTTC CTCGCCGGTC TCCTCGCTGT CGTCTTACTC
AACCGGATCT TCATCCAGCC CGTTCTCGAA CGGGTACTCC GTCAGCGGAA CCACAACAAC
CCCACACTTC GAAACGCCTT GCTCAGGTAT TTCCAGATCG TTGCCATCGT TATCGCCATC
CTCGTCGGTG CAAGCGTCGC TGGGTACGGC CCCGTACTCG GCAACTCCGC ACTCCTCATC
AGCGCTATCG CGCTGGCGAT CGGCGTCGCA GCCCAGGAGG TGATCGGTTC GCTGGTTAGC
GGTATCGCCT TAGTACTCGA CCCGGACTTC AACGTCGGCG ACTACATCGA GTGGCCAAAC
GGCGAGGGAG TCGTGCAGTC GATCGCCCTT CGAACCACGC GCGTCGAAAC GCAGAACGGA
GAACTCGTAA CGATCCCGAA CACGATCCTG ACGAACAACG AGATATCCCG TCCGTTCGGC
CGGGGGAACC ATCGGGTAGT CCAGCAGTTC GGGGTCGCCT ACGAAGACGA GATCGACGAA
GCGATAGGAC ACTTCAAGGA TGTCGCAGCC TCAACCGACG CAATTCTCGC AGACCCGGCC
CCGATGGTCT ATGTCGACGA ACTCGGGGGC GAGGTCACCG TTCGCGTCCA TTACTGGATC
GAAGATCCCG GTCGGCAAGA CATCCTCGTC GTCCAGTCGG AGTACGCTCG TCGGATCAAG
CGCCGATTCG AGAACGAGGG AATCACGATC GGTCCCACGT CGGAGATCGA ACTCTCTGGT
CGGGTCGGCA TCGACGATTC GGGACGGCGT CGGTGA
|
|---|
| Protein sequence | MFPHTPPCRL WGWSVFPAAP AVVRATTPEP EVGPTELFEY WPVVVRLGWF LAGLLAVVLL
NRIFIQPVLE RVLRQRNHNN PTLRNALLRY FQIVAIVIAI LVGASVAGYG PVLGNSALLI
SAIALAIGVA AQEVIGSLVS GIALVLDPDF NVGDYIEWPN GEGVVQSIAL RTTRVETQNG
ELVTIPNTIL TNNEISRPFG RGNHRVVQQF GVAYEDEIDE AIGHFKDVAA STDAILADPA
PMVYVDELGG EVTVRVHYWI EDPGRQDILV VQSEYARRIK RRFENEGITI GPTSEIELSG
RVGIDDSGRR R
|
|---|
| |