| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1055 |
|---|
| Symbol | |
|---|
| ID | 7400127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1050516 |
|---|
| End bp | 1052213 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643708123 |
|---|
| Product | BCCT transporter |
|---|
| Protein accession | YP_002565722 |
|---|
| Protein GI | 222479485 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACC CCGGATCGAG CATGATCGAC GAGTTCCGCG AAGAGATCGA TCCGATCGTG
TTCGCGTTCG GCGCCCTGTT GACGGTGGGT GTGATCGCCG CGTTCTTCAT CAGCCCGTCG
GCCGTCGAAA ACGGTATTTC GTCGCTGAAC AACCAACTGC TCGGCGCGTT CAACTGGGCG
ATGATGTTGA TCGTGTTCCT GATCGTGCTG TTCCTGCTCT TTCTGATCGT GGGTCCGTGG
GGCGGAATCA AGTTCGGTGA CGAGCCCCCC GAGTACAGTT TTCTCTCCTT TTTCGCGATG
CTGTACTCCG CGGGGTTCGC GGCCGGCGTC GTGTTCTGGG GGCCGACCGA GGCGCTGTTC
TACTACAACA ACCCCTCACC GCTCTTCAGT AACATCGAGG GGGGAACGGC CGAGGCGATG
ACGATTGCCG TCCAGCAGAC GCTGTTCCAC TGGGCGCTGC CACAGCTCGC GGTGTTCACC
ATTATGGGCA TCGCGATCGG CTACTTCGCG TACAACTACG ACAACGTCCC GCTGCGCGTC
TCTTCGGCGC TCACGCCGAT CCTCGGCGCC GACAACCTCG ACGGTCCGGC CGCGAAGGTC
GTCGACATCC TCGCCGTCTT CGCGACGATC GGCGGCGTCG CCACGTCGCT CGGCTTTATC
GGGAGCCAGT TCGTCACCGG CCTCGACTAC CAGTGGGGGA TCAACATGGG CGATCTGGGC
ATTCTGCTCG TCGTCACCAT GATGACCCTG CTGTTTACGA CCTCGATGGT ACTCGGGGTC
GACAAGGGGA TCCGTCGGCT CTCGAACTTC AACATGATCC TGTTCGTCGT GCTCATGTTC
GCGACGTTCA TCGTGGGCCC GACGCTGTTC CTCGTGCTGC TCGGCACGCA GGCGTTCGGC
GGGATGGTCG CCGATTTCGT CTCGATGAGC CTCTTTACCG GTGCCGGGCC GATGGGTGCG
GGCGACGGGA GTGCGACCGG CTGGATAAAC GCGTGGACGG TGTTCTACTG GGCGTGGGCG
CTCTCGTGGT CCCCGTTCGC GGGGCTGTTT ATCGCCCGGA TATCCAAGGG ACGGACCGTC
CGCGAGGTCG CGTTCACGGG GATCGTCGCG ACCTCCGGCG CCACAATCCC GTGGTTCACG
TTCGTCGGCG GCACCGCGGT CTGGGCACAG CACAACGGTA TCGCCGACTT CAGCGCGGTG
ATCGCCGGCA ACGCGGGCCC GGAGGTGTCC GGATTCATCC TCTTCGAGGC ACTGAACTTC
ACGCTGAATC TCGGGGGGGC ATCGATGACG ATCCCGATCG GGTCCGTACT GATCTACGCG
TTCATGATCC TCGTGACGAC GTTCTTCGTC ACGTCGGCGG ACTCCTCGAC GCTGGCCGTC
TCGATGATGA CCACCGGCGG AAAGGCCAAA CCGTCGAACA TCAACCGCAT CTTCTGGGGC
GTCGTCCTCG GGTTGACCGC AGCGATCCTG ATGATCCTCG GCGGTAGCGG CAGCGCGAAC
ACGCTCCAAC AGGCGGCGAT CATCACCGGG ACGCCGTTCG CCTTCGTCTG CTTCCTCGCG
ATGCTGTCGC TGATCAAGGA CTTCGGGGAG AACTACGATC AGGTGCTCTT CCAGAACGAA
ACCGTGCTGT GGGGATCGGG GAAGGACGCA GACTCCCCGT CCAGTTCGGT TGAATCTGCC
GGGTCAGACG ACGACTAA
|
|---|
| Protein sequence | MSDPGSSMID EFREEIDPIV FAFGALLTVG VIAAFFISPS AVENGISSLN NQLLGAFNWA
MMLIVFLIVL FLLFLIVGPW GGIKFGDEPP EYSFLSFFAM LYSAGFAAGV VFWGPTEALF
YYNNPSPLFS NIEGGTAEAM TIAVQQTLFH WALPQLAVFT IMGIAIGYFA YNYDNVPLRV
SSALTPILGA DNLDGPAAKV VDILAVFATI GGVATSLGFI GSQFVTGLDY QWGINMGDLG
ILLVVTMMTL LFTTSMVLGV DKGIRRLSNF NMILFVVLMF ATFIVGPTLF LVLLGTQAFG
GMVADFVSMS LFTGAGPMGA GDGSATGWIN AWTVFYWAWA LSWSPFAGLF IARISKGRTV
REVAFTGIVA TSGATIPWFT FVGGTAVWAQ HNGIADFSAV IAGNAGPEVS GFILFEALNF
TLNLGGASMT IPIGSVLIYA FMILVTTFFV TSADSSTLAV SMMTTGGKAK PSNINRIFWG
VVLGLTAAIL MILGGSGSAN TLQQAAIITG TPFAFVCFLA MLSLIKDFGE NYDQVLFQNE
TVLWGSGKDA DSPSSSVESA GSDDD
|
|---|
| |