| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0966 |
|---|
| Symbol | |
|---|
| ID | 7401860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 957380 |
|---|
| End bp | 959305 |
|---|
| Gene Length | 1926 bp |
|---|
| Protein Length | 641 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643708032 |
|---|
| Product | beta-lactamase domain protein |
|---|
| Protein accession | YP_002565634 |
|---|
| Protein GI | 222479397 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1782] Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain |
|---|
| TIGRFAM ID | [TIGR03675] arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAG TCGATAAGCA ACTCGATACC CTGAAATCAG AGATCGAACA GGAAATTCCG
AACGACATTA CGGTCACCGA CGTGAAATAC GAGGGGCCGG AGCTGGTCGT GTACACCCGC
GACCCCAAGG AGTTCGCCGG CGACGGCGAT CTGATCCGCC GGCTCGCCTC CAAGCTCCGG
AAGCGGATCA CGATCCGCCC GGACCCGAGC GCCCTCGCTC CGCCGGCGCG TGCCGAGGAG
GAGGTCCGGT CGGTGATTCC GGAGGAGGCC GGCGTGACCG ACCTCGATTT CCACGAGGAC
ACCGGCGAGG TCGTCATCGA GGCCGAAAAG CCCGGCATGG TGATCGGTCG CCGCGGCTCG
ACGCTCCGGG AGATCACCCA GAAAGTCGGC TGGACCCCCG AGGTCGTTCG GACGCCCCCG
ATCGAATCCT CCACCGTCTC GAACGTGCGC GGCTTCCTGA AGAACGAACG CGAGGAGCGC
CGAGACATTC TCGAACGCGT CGGCCGACAG ATCCACCGCG AGGAGATGTC CGACGACGAA
TGGGTCCGGA TCACCACGCT CGGTTGCTGT CGCGAGGTCG GCCGCGCCGC CTTCATCCTC
TCGACGCCCG AGACGCGCGT CCTGATCGAC TGCGGCGACA AGCCCGGCGC GGAGGGCGAG
GTGCCGTACC TCCAAGTGCC CGAGGCGCTC GGCGCCGGCG CCGCGACCCT CGACGCGGTC
GTGCTCACTC ACGCCCACCT CGACCACTCG GCGTTCGTCC CCCTCTTGTT TAAATACGGC
TACGACGGCC CGATCTACAC GACTGAGCCG ACCCGCGATC TCATGGGTCT GCTCACCCTC
GACTACCTCG ACGTCGCCGC CAAGGAGGGG CGCACGCCTC CTTACGAATC GTCGCAGGTC
CGCGAGGCGA TCAAACACAC GATCCCGCTG GAGTACGGCG ACGTAACCGA CATCGCGCCG
GACGTGAAGC TCACCTTCCA CAACGCGGGC CACATCCTCG GCAGCTCCGT CACCCACTTC
CACATCGGCG ACGGCCTCTA CAACGTCGCC TTCTCCGGGG ACATTCACTA CGAGGACACC
CGCCTGTTCA ACGGCGCCGT CAACGACTTC CCGCGCGTCG AAACGCTCGT CTTAGAGTCC
ACCTACGGCG GCCGCAACGA CTACCAAACC GATCAGGCCG ACTCCGAAGA GGCGCTCAAA
GAGGTCATCA ACGAGACGTA CGACCAGGGC GGGAAGGTCG TCATCCCTGC GTTCGCCGTG
GGGCGGTCTC AGGAGATCAT GCTCGTCTTG GAGGAGGCGA TGCGGAACGG CGATATCCCG
GAGATGCCGG TCCACCTCGA CGGGATGATC TGGGAGGCGA CCGCGATTCA CACCACCTAC
CCCGAGTACC TCCGAGACGA CCTCCGCGAC CGGATCTTCC ACGACGACGA AAATCCGTTC
CTGGCCGACC AGTTCAACCA CATCGACGCC GGCGAGGACG AGCGACAGGA CGTCGCCGAC
GGCGACGAGT GCATCATCAT CTCCACCTCC GGGATGATCG AGGGCGGACC GATCATGTCG
TGGCTCCGCC ACATCGGCCC GGACCCGGAC TCGAACCTCG TGTTCGTCGG ATACCAGGCC
CAGGGGACGC TCGGTCGCCG GATCCAGAAC GGCTGGGACG AGATTCCGGT CGACGGCTGG
GGCGGCGGCG GCCGCGGCGA CACGCTCACC CTGCAGATGG GGACCGAGGT CGTCGACGGC
TTCTCCGGCC ACGCCGACCG GCAGGGGTTA GAGAACTTCG TGAAGACGAT GAACCCGCGC
CCCGAGAAGG TGCTCTGCGT CCACGGCGAC GAGAGTTCCG TCCAAGACCT CTCGTCGGCG
CTGTACCACG ACTACAACAT GCGGACGTTC GCGCCGAAGA ATCTGGAGAC GTTCCGGTTC
AAGTGA
|
|---|
| Protein sequence | MSQVDKQLDT LKSEIEQEIP NDITVTDVKY EGPELVVYTR DPKEFAGDGD LIRRLASKLR
KRITIRPDPS ALAPPARAEE EVRSVIPEEA GVTDLDFHED TGEVVIEAEK PGMVIGRRGS
TLREITQKVG WTPEVVRTPP IESSTVSNVR GFLKNEREER RDILERVGRQ IHREEMSDDE
WVRITTLGCC REVGRAAFIL STPETRVLID CGDKPGAEGE VPYLQVPEAL GAGAATLDAV
VLTHAHLDHS AFVPLLFKYG YDGPIYTTEP TRDLMGLLTL DYLDVAAKEG RTPPYESSQV
REAIKHTIPL EYGDVTDIAP DVKLTFHNAG HILGSSVTHF HIGDGLYNVA FSGDIHYEDT
RLFNGAVNDF PRVETLVLES TYGGRNDYQT DQADSEEALK EVINETYDQG GKVVIPAFAV
GRSQEIMLVL EEAMRNGDIP EMPVHLDGMI WEATAIHTTY PEYLRDDLRD RIFHDDENPF
LADQFNHIDA GEDERQDVAD GDECIIISTS GMIEGGPIMS WLRHIGPDPD SNLVFVGYQA
QGTLGRRIQN GWDEIPVDGW GGGGRGDTLT LQMGTEVVDG FSGHADRQGL ENFVKTMNPR
PEKVLCVHGD ESSVQDLSSA LYHDYNMRTF APKNLETFRF K
|
|---|
| |