| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0860 |
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| Symbol | |
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| ID | 7400826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorubrum lacusprofundi ATCC 49239 |
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| Kingdom | Archaea |
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| Replicon accession | NC_012029 |
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| Strand | + |
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| Start bp | 850479 |
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| End bp | 852290 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643707925 |
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| Product | TraB determinant protein |
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| Protein accession | YP_002565528 |
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| Protein GI | 222479291 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1916] Uncharacterized homolog of PrgY (pheromone shutdown protein) |
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| TIGRFAM ID | [TIGR00261] pheromone shutdown-related protein TraB |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.484373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGAGA CGCCAGGGGG ATCCGACGGC GCGTCCCCGC CCCCGACGGC GAGCGAGCCG
GCGCCGACGG CAAGCGACTC GGCGCCAATC GATGGCGAGG GTTCCCCTGC GAGTGGTGCA
GCCGGAACGC CCGCCGCCGG CGACGAGTCC GGCTCCGTGA CGGTCGTCGG AACCGCGCAC
GTCTCCAAGC AGTCGGTCGA CGAGGTCGAG GAGACGATCG AGCGCGAGCG ACCCGACGTG
GTCGCCGTCG AGCTCGACGA GGGGCGATAC CGCCAGATGA ACGGCGAAAG CCCCGACGAT
CTCGACGCGA GCGACCTGCT GCGGGGAAAC ACCGTCTTCC AGTTCCTCGC GTACTGGATG
CTGTCGTACG TCCAGACCCA GCTCGGTGAC CGGTTCGACA TCGAGCCCGG CGCCGACATG
CGGGCCGCCA TCGACGTCGC CGAGGGGCTC GGCATCGACG TGGCGCTGGT CGACCGAGAC
ATCCAGACGA CGATACAGCG CTTCTGGGCC CGGATGTCGC TCACCGAGAA GCTGCGAATG
GTGGGCGGAC TCGCGTTCGG CGTCACCGAC TCCCGCGTGG TTGGGGTGTT AGTTGGACTG
TTCGTCGGTA TTCTCGCTGG TCCGGTGATC GGGCTCTTCG GTGGGAGCGT CGGCGTCACT
GACGCCCTGT TGACGAGCGT CACGGGCGGC GTGCTCGCCA CGGTTGCGGT CGCGATCGCC
GTCGATCAGG TCGGGAAGGT CGCGCTCTCA CCCGATGGAC GCCTCTACGC CGCAGCGGCA
CTGGGCGTCG CGGCCGGTAT CATCGCCGCC GCGGTCGGTG CGCTCGACGG GATCGTCGCG
ACGTATCTCG GCGGCTTCGC CGTGACGGCG ATCGGCAGCC TCGGGCTCGG GATCTCGCTC
GGCTTAACCC TCGGTGTGGT CGCGTCACTC GCGATGACCG TCGTCGGACG GGGCACCAGC
GAGCCCGAAC ACGGCGGGAT CGAGGAACTC GGGATGGAGG ACCTGACCGA CACCGACGTG
GTGACGATGA TGATGGAGGA GTTCCGGCAG TTCTCCCCGG GCGGCGCGGA GGCGCTCATC
GACGAGCGCG ACGCCTTCAT CGCCCACCGG CTCGTCGCCC TCCGCGAGGC CGGGCACAAC
GTGGTCGCCG TCGTCGGCGC GGGTCACCGC GCGGGGATCG AGGGGTACCT CGCCGACCCC
GCGTCGCTCC CGCCGATGGA AGACCTCGTC GGGAAAGAGC GCGGGCGACG GCTCCCGTGG
AAGAAGGCGA TCGGCTACGC GATCACCGTC AGCTTCGTGG GCTTCTTCGT CCTGCTCGCG
CTCGCCGGCG TGGAGAACGC GTTCCTGTTC CGGCTGTTCG GCGCGTGGTT CCTGATCAAC
GGCGCGTTCG CGTTCGCATT CGCGAAACTC GCCGGCGCAC GCTGGACTTC GGCCGGCGTC
GGCGGCGCCG TCGCGTGGAT GACCTCGATC AACCCGGTGC TCGCGCCCGG CTGGTTCACC
GGCTACGTCG AGCTCCGGCA TCTCACGGTG AACGTCGGCG ATATCGGACG GCTCAACGAG
CTGCTCTCCG ACGAGACGCA GTCGCCCTCC GAGCTGGTCT CCGCGATGCT CGACGTGCCG
CTGTTCAAGC TCATCGTCGT CGTCGCGATG ACGAACATCG GCAGTATCGT CGCGAGCTTC
CTGTTCGCGG TGTACGTCAT CCCCGCGATG TTCGGCGACG TAGGCGGCGT CGACGAGGTG
GGACGGCTCA TGGTCGAGGG CGCACGCACC GGCGCGGAAC TGATCCGAAG CGCGGTCACG
GGTGGCGCAT GA
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| Protein sequence | MTETPGGSDG ASPPPTASEP APTASDSAPI DGEGSPASGA AGTPAAGDES GSVTVVGTAH
VSKQSVDEVE ETIERERPDV VAVELDEGRY RQMNGESPDD LDASDLLRGN TVFQFLAYWM
LSYVQTQLGD RFDIEPGADM RAAIDVAEGL GIDVALVDRD IQTTIQRFWA RMSLTEKLRM
VGGLAFGVTD SRVVGVLVGL FVGILAGPVI GLFGGSVGVT DALLTSVTGG VLATVAVAIA
VDQVGKVALS PDGRLYAAAA LGVAAGIIAA AVGALDGIVA TYLGGFAVTA IGSLGLGISL
GLTLGVVASL AMTVVGRGTS EPEHGGIEEL GMEDLTDTDV VTMMMEEFRQ FSPGGAEALI
DERDAFIAHR LVALREAGHN VVAVVGAGHR AGIEGYLADP ASLPPMEDLV GKERGRRLPW
KKAIGYAITV SFVGFFVLLA LAGVENAFLF RLFGAWFLIN GAFAFAFAKL AGARWTSAGV
GGAVAWMTSI NPVLAPGWFT GYVELRHLTV NVGDIGRLNE LLSDETQSPS ELVSAMLDVP
LFKLIVVVAM TNIGSIVASF LFAVYVIPAM FGDVGGVDEV GRLMVEGART GAELIRSAVT
GGA
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