| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3197 |
|---|
| Symbol | |
|---|
| ID | 7383419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 3417204 |
|---|
| End bp | 3421160 |
|---|
| Gene Length | 3957 bp |
|---|
| Protein Length | 1318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643656511 |
|---|
| Product | phage tape measure protein |
|---|
| Protein accession | YP_002554628 |
|---|
| Protein GI | 222112364 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5281] Phage-related minor tail protein |
|---|
| TIGRFAM ID | [TIGR02675] tape measure domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAACC GTATTTCCAT CCTTGTTGCG CTCGAAGGCG CTGACGAGGG GCTCAAACGC
GCCATCAATT CGGCCGAGCG CAGCCTTGGC GAGTTTGGCG CGAACGCCAA GACCGCAGGC
GATAAAGCCG CCGCCGGGAT GGCCGAGGTC AAGGCCGGGA TGAACGCCTT CGGCGATCAG
GTCGCCAAGG CCAAGACGCA GTTGCTGGCC TTCCTCACCC TCAACTGGGC GGCGGGCAAG
GTGCAGGAGA TCGTCCAGAT CGCCGACGCC TGGAACATGA TGTCCGCGCG CCTGAAGCTC
GCCACCGCAG GCCAGCGCGA ATACACGGTC GCGCAGAAGG ATCTGTTCGC CATCGCGCAG
CGCATCGGCG TGCCGATCCA GGAAACCGCC ACGCTCTACG GCAAGCTCCA GCAGGCCGTG
CGGATGCTGG GTGGCGAGCA GAAGGACGCG CTCTCGCTGA CCGAGAGCAT CTCGCAGGCG
CTGCGCATCT CCGGCGCATC GGCCACCGAG GCGCAGTCAT CCCTGCTGCA GTTCGGTCAG
GCGCTGGCCT CGGGAGTGCT GCGCGGCGAG GAATTCAACT CTGTCGTCGA AAACAGCCCC
CGTCTGGCCA AGGCACTGGC CGACGGCCTG AACGTACCCA TCGGACGGCT GCGCAAGCTC
GCCGAGGAAG GGCGGCTCAC CGCTGACGTG GTGGTCAACG CGCTGATGAG CCAGAAGGAC
AAGCTGGCCG CCGAGTACGC GCAACTGCCG ATGACCGTTA GCCAGGCCTT CACGCGTCTG
TCGAACGCCT TCGGACAGTG GGTCAGCAAG CTCGATGAAT CGACCGGCTT CACCAAGAAG
CTCGCCGAGG CCCTGACGTG GCTGTCGGAG AACCTGGACA CGGTGATGAA GTGGCTGGGC
CGCATCGCCG AGGTCGGTCT CGCGGTGCTG GTCTACCGCC TAATCCCGGC GCTGATCATC
GCGTGGCAGA CGGTGGGCGC GGCAGCGGTG ACGGCGGCCA GCACCACGGC GGCAGCGTGG
GCCACGGCCA ACCTGTCCGT CTCGAACGCC ATCGCCACGG TCGGCAAGCT GCGCGTGGCC
TTCGGCGTGC TCGGCGCGGC CATCATCGGC TGGGAGATCG GCACGTGGCT GTCCGAGAAG
TTCGAGATCG TCCGCAAGGC GGGCATCTTC ATGGTGCAGG TGCTGATGAC GGGCATCGAG
CACCTGCGTT ATCGGTGGGA GGTGTTCGCC GCCATCTTCA CGTCCGACAC CATTGCCGAG
GCCACCCAGC GCCACAACGA ACGCCTGACG GAAATGAACC GCATCTTCGC CGAGATGTAC
GCCGACGCCA CCGAAGGCGC GAACGCGGCC AAGGGCGCGA TGAACACCGC CGCGACCGCC
GCCGAGGAAA TCGCCAAGCG GCTGGAAGCC GTGCGCCAAG GCACGCAGGA AGCGGTCGGG
CGCGGCATCG AGGCCGTCCA CGCTGCGCTG GAAAAGCTCA AGTCCCGGCT GGGCGAGGTC
GAACAGGCGG TGGGCAAGGC CCAAGGCGTG GTCAACGACG CGACCGCCAA GATGGCCGAG
GCCTACAAGG GGCTGACCTC CATCGTCGAG GCCAGCCTCG CGCAGCAGGT GCAGGCGGTG
AAGAACCGCT ACGAGCAGGA GAAGGCGGAA CTGGAACGCA CCCAGCAGTC CGAAACGGCC
AAGATCACCA AGTCCACTCA GCTGCTCACC GAGGCGCTGA CCCAGCAGGC AACCCTGCGC
CGTCAGGCCA CGACCGAGAC GCTCGGCCTG ATCGATCAGG AAACGCAGGC GCGCAAGGAC
GCCGCTGCCC GGCAAGGCCA GACCGAGGAA GATCGCCGCG CCAACGTGCA GCGGGTCGAG
AACGACATCC TCGCCACCAA GCGCCAGACC TTGACGCAGG CGCTCTCCGA GTACCGCCAG
CACATCGACG CGCTCAACGC CGAAGCCAAC CGGCATCTGG CCGAAGTGCA GCGCATCGAG
GAAGCCAAGC GCCAGTTGTC GATGTCCACG GAGGAGCGCA TCCGCGACAT CCGCCGTCAG
GGCATGACGG AGTACGAGGC CACTGAGGAT CGCAAGCGCC AGATCACTGA GATGCAGGAG
CAGGCGCGCC GGGCGCTGGC CAACGGCGAG CTGGAGCTTG CCCGCCAGCT CGCGCAGAAG
GCGATGGACA TGGCCGCGCA GGTTGCCACC AGCCAGACCA ACGAGGCCAA GCGCGGCGAG
GAAGCGCGCA AGCAGTCCGA GCAGGCGGTA TCGCAGGTCA CGCAACTGGA AGCGCAGTCG
CGCGAGGCCT ACCGCAGGCA GGAATACCAG CAGGCCACCG ATCTGATGCG GCAGGCCGAT
CAGTTGCGCG CCGAACTGGC GCAGAAGGTC AAGGACGCCG ACGCGCAGGC CGCGCAAGGC
AAACAGGGCG TGCGCGACGC CATCGACCGC ATCCGCCAGT CCGAGGAAAT CCTCAACCAG
ACGCTGGACG CCGAAGCGAA GGCGCACCAG ACGGCGGCAC GCTCGGCGAT CACCGCGCGC
GATGAGATTC AGCGCACGCT GACCGAGACC ACACGCCAGA TCGACGACAT CACCGCCAAG
CTCAAGGACG GTCTGAAGGT TACGCTCGAC GCCGACACCA CGCGCTTCGA CAAGGCCATC
ACTGATCTGG ACAAGGCGCT GGCCGAAAAG GAATACCTGC TCCAGATCCA GGCCGATCTG
CAGGAAGCGG AGAAGAAGCT CAAGGAATAC GAGCAGTTGC TCAAGGAAGG CAAGACGCTG
CCGGTCGATG CCGATGTGTC CAAGGCCAAG GAGGCACTGG ATAAGCTCAA GACCTACGCC
GACCAAAACG CGCAGTTCGA GCTGAAGGTG GCGACCGAGA AGGCGCAGGC GGCTATCACC
AATGTCGAGG GGATGATCAA GGCGCTGGAT CGCATCCAGA CCGAGTCGCA GCATCAGGTG
GCCAGCAACG TCGGTGCGGT ACGCGCGGAA ATCGACAGCC TCAACGGGCG CAACACTTCC
AGCACCCACA CCATCTACGT GACCAAGGTT GAAACCAATG CCACTGGCGG TCTGGTGGGT
GGCGTGCGGA GGTTTGCCGA CGGCGGTGCG GTGGCTCCGG CCTTTCCCCG GATGAGCGGT
GGCTCGGTGC CCGGCTCCGG CCACCACGAC ACCGTGCCGC GCACCCTGGA TGCCGGGGCC
TTTGTGATCC GCAAGGCGGC GGTGCGCAAA TATGGCAGCA GCCCCTTGGC CCGGCTGGCC
AACCACGCGG CCCGGTTTGC CACTGGCGGA TTTGTGGGCA TCACCACGCC GAAGAAGAAC
CGCGAAGTCG CACAGGCGCA AAAGATGATG GAACTGGGCA TGCGCAGCAT CAATAACGGC
AACTGGGGTG GGCCCATTGC CAACCAGGCC ACGCGCAACC ACTGGTCAAA GCTCTGGAAC
CTGGACAAAC CGCTACTCGA GCGGATGGAG TCGCTCAAAA CCTTGACGAG TCGCGAGCGT
TCGGCGCTGG CCACCGTCAC CCAGCGCTGG CAGTGGGCCA TGAACGCTGC AAGGGACGAT
CTGGAGCGCG AGCTGCTCGA ATACATGGAG CAGCACCAGG GTGAGTTCTA TCGGCGAGGA
GGACTCGCCA AGTCCGACAC TGTGCCCGCC ATGCTCACGC CCGGCGAGTA CGTGGTCAAC
CGCAACGCCG TGGCGCGCCT GGGCGTGGGG TTCTTCGAGG CCATCAACAA CCTGAGCGCT
CCGGCGCAGG CACTGGCCGG GCGCGCGCTG GCGGGCATTC AGGGCTTCGC TTCGGGCGGC
CTGGTGCATC CCGCAAGCCA CAGCCTGCCA CGTCCGTCGT TGCTCGAAGG TACGCCCACC
CGCACCGTGC GCGTGGAACT GTCCTCGGGA CAACAGAAGG TCAACGCCAG CGTCGATGCG
CGCGACGAAG CGCGACTGCT GCAACTGCTG GACGCCGCTC GCGCCCGCAC GGCTTGA
|
|---|
| Protein sequence | MANRISILVA LEGADEGLKR AINSAERSLG EFGANAKTAG DKAAAGMAEV KAGMNAFGDQ
VAKAKTQLLA FLTLNWAAGK VQEIVQIADA WNMMSARLKL ATAGQREYTV AQKDLFAIAQ
RIGVPIQETA TLYGKLQQAV RMLGGEQKDA LSLTESISQA LRISGASATE AQSSLLQFGQ
ALASGVLRGE EFNSVVENSP RLAKALADGL NVPIGRLRKL AEEGRLTADV VVNALMSQKD
KLAAEYAQLP MTVSQAFTRL SNAFGQWVSK LDESTGFTKK LAEALTWLSE NLDTVMKWLG
RIAEVGLAVL VYRLIPALII AWQTVGAAAV TAASTTAAAW ATANLSVSNA IATVGKLRVA
FGVLGAAIIG WEIGTWLSEK FEIVRKAGIF MVQVLMTGIE HLRYRWEVFA AIFTSDTIAE
ATQRHNERLT EMNRIFAEMY ADATEGANAA KGAMNTAATA AEEIAKRLEA VRQGTQEAVG
RGIEAVHAAL EKLKSRLGEV EQAVGKAQGV VNDATAKMAE AYKGLTSIVE ASLAQQVQAV
KNRYEQEKAE LERTQQSETA KITKSTQLLT EALTQQATLR RQATTETLGL IDQETQARKD
AAARQGQTEE DRRANVQRVE NDILATKRQT LTQALSEYRQ HIDALNAEAN RHLAEVQRIE
EAKRQLSMST EERIRDIRRQ GMTEYEATED RKRQITEMQE QARRALANGE LELARQLAQK
AMDMAAQVAT SQTNEAKRGE EARKQSEQAV SQVTQLEAQS REAYRRQEYQ QATDLMRQAD
QLRAELAQKV KDADAQAAQG KQGVRDAIDR IRQSEEILNQ TLDAEAKAHQ TAARSAITAR
DEIQRTLTET TRQIDDITAK LKDGLKVTLD ADTTRFDKAI TDLDKALAEK EYLLQIQADL
QEAEKKLKEY EQLLKEGKTL PVDADVSKAK EALDKLKTYA DQNAQFELKV ATEKAQAAIT
NVEGMIKALD RIQTESQHQV ASNVGAVRAE IDSLNGRNTS STHTIYVTKV ETNATGGLVG
GVRRFADGGA VAPAFPRMSG GSVPGSGHHD TVPRTLDAGA FVIRKAAVRK YGSSPLARLA
NHAARFATGG FVGITTPKKN REVAQAQKMM ELGMRSINNG NWGGPIANQA TRNHWSKLWN
LDKPLLERME SLKTLTSRER SALATVTQRW QWAMNAARDD LERELLEYME QHQGEFYRRG
GLAKSDTVPA MLTPGEYVVN RNAVARLGVG FFEAINNLSA PAQALAGRAL AGIQGFASGG
LVHPASHSLP RPSLLEGTPT RTVRVELSSG QQKVNASVDA RDEARLLQLL DAARARTA
|
|---|
| |