| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2524 |
|---|
| Symbol | nfrB |
|---|
| ID | 7384795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 2685685 |
|---|
| End bp | 2687895 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643655832 |
|---|
| Product | bacteriophage N4 adsorption protein B |
|---|
| Protein accession | YP_002553959 |
|---|
| Protein GI | 222111695 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGGTC TATATCTCTA CCTGCTCAAG ATGGTGGCGA TCGGGGTGGC TGTCGTCATC
TTCATCAGCA GCCTGGATGA CCTGTTCATC GATATCGCCT ACTGGGTCCG CCGCGTCTGG
CGCGCCTTCA CGGTGTACGC ACGCCACGCG CCGCTGAACT ACAAGACGCT CTACGACGCC
GAGGAGAAGC CGCTGGCCAT CATGGTGCCC GCCTGGCAGG AGCACGGCGT GATTGGCCAG
ATGGCGCAAC TGGCCGCCAC CACGCTGGAC TACGAGAACT ACCACATCTT CATCGGCACT
TATCCCAACG ACCCGCAAAC GCATGCCGAC GTGGAGCAGG TGCGTGCACG CTTCCCCAAC
GTGCACACGG TGGTCTGCGC GCGTCCCGGA CCGACCAGCA AGGCCGACTG CCTGAACAAT
GTGGTGGACG CCATCCTGCA GTTCGAGAAG CGTTCTGGCG TGCGCTTTGC CGGCTTCATC
CTGCACGACG CCGAGGACGT GCTCTCCAAG TTGGAACTGC GGCTGTTCAA CTACCTGGTC
AACCGCAAGG ACCTCATCCA GCTGCCCGTG TACCCGCTGG AGCGGCCCTG GAACGACTTC
ACCGGCGGGC ACTACCTTGA CGAGTTTGCG GAGCTGCACG GCAAGGACAT CGTGGTGCGC
GAGGCCCTGG TCGGCCAGGT GCCGAGCGCG GGCGTGGGGA CGTGCTTCAG CCGTCGCGCC
ATCATGGCCC TGCTGCAACA GGGCGATGGC ATTGCCTTTG ACACGCAGAG CCTGACCGAG
GACTACGACA TCGGCTTTCG CCTCAAACAG CTGGGCATGC AGGAGGTGTT CGTGCGCTTT
CCCGTCGAGG AGGACGATCA CATTGGTCGC ACGCCCTCGC CAGAACGTGT GCCCCTGCGC
AGCGAACGCG AGGCCAGCGT CATCTCCGTG CGCGAATTCT TCCCTGACAC CGTGGCCGCC
GCCGTCCGGC AGAAGTCCCG CTGGATCACG GGCATTGTCA TCCAGGGTTT TCGTACGCTG
CGCTGGACGC ACAGTGCCGT GCTGAACTAC TTCCTCTGGC GCGACCGCAA GGGAATCATC
ACCAATTTCG CCAGCTTCAC AGCCACGCTG CTGGCCATGC AGCTGATCGG CATCTGGCTC
TACCAGCGCC TAGTGCCGGA TGCCTACCGG TTCCTCTCGG TCTTCGAAGG CGACTGGTGG
TTCTATGCGC TGCTCTTGGC CAACCTGGTG CTCATGTTCA ACCGCATCGT GCAGCGCGTG
TTTTTCGTCA CCAGCTACTA CGGCGTGGTG CAGGGATTGC TGTCGGTGCC TCGGCTGCTG
TGGGGCAACT TCATCAACTT CCTTGCCGCC TGGCGGGCGC TGGCCCAGGC ATGGCGCGCC
AAGGACCTGC GGCGCATGGC CTGGGTCAAG ACGGACCACG AATTTCCCCT CTTGGGCGAA
GGGCCGCGTC AGCATCGCGC ACTGGGGCAG ATCCTGGTCC ACCAAGGCGC CCTGACCGAG
GCGCAACTGC TTGATGCGCT GGAGCATCCC ATGCGTGGGC TGCGTCTGGG CGCAGCGCTG
GTGCACCGTG ACGTCATCAC GCCCCAGCAA CTGGCTGCCG CGGTTGCCGA GCAGGCCGGC
GTGCCATGGG AAACCCTGGG AGGGCAGGCC GTGGACAGCG ACCTGGCGGC ACTGGTGCCA
GCGGCCGTGG CGCTGCGCTA TAGCGTCGTG CCGCTGCGCC AGCAGGGGCG GGTCCTGGTG
GTGGCCAGCG AGGCGGCGAT CGACCCGGTG TCGCTGGCCG CCATCGAGCG CAAGCTGGGA
CGTACCGTGC GCTACGTCAT CGTGCCCAAG GGCGAGGTCA CCGTGGAACT GCGGCGCCTG
TATGCACACC ACGGCACAGA ACCCGCACGC GACCTGCTGG CGCAGGCCGT GCAGCAGCAG
CGCGTTACCG CCGAAGAGGC GCGGGGCATC TGGGCCCGCT ATCTCTCGCG CCAGTTGCTG
CTGGGCGACG TGCTTCTGGC CGTGGGCAAG ATTGACCAGG CGGTGCTGGG TGCCCTGCTG
CTGCAAAAGG AGAAGTCCGA TGCCAGCCTG GGCGCCTTCC TCGTGGAGCA TGGCGTTCTG
ACGGAGTCGG CCGCGCAGGA GGCGCTGCAG CTGCAGCAGC AGCTGCAGGT CACCATGGAG
CAACTGCTGT GCCGCGCCAA TGCGCAGCCC ACCGTCCGGG CCATTGCTTG A
|
|---|
| Protein sequence | MPGLYLYLLK MVAIGVAVVI FISSLDDLFI DIAYWVRRVW RAFTVYARHA PLNYKTLYDA
EEKPLAIMVP AWQEHGVIGQ MAQLAATTLD YENYHIFIGT YPNDPQTHAD VEQVRARFPN
VHTVVCARPG PTSKADCLNN VVDAILQFEK RSGVRFAGFI LHDAEDVLSK LELRLFNYLV
NRKDLIQLPV YPLERPWNDF TGGHYLDEFA ELHGKDIVVR EALVGQVPSA GVGTCFSRRA
IMALLQQGDG IAFDTQSLTE DYDIGFRLKQ LGMQEVFVRF PVEEDDHIGR TPSPERVPLR
SEREASVISV REFFPDTVAA AVRQKSRWIT GIVIQGFRTL RWTHSAVLNY FLWRDRKGII
TNFASFTATL LAMQLIGIWL YQRLVPDAYR FLSVFEGDWW FYALLLANLV LMFNRIVQRV
FFVTSYYGVV QGLLSVPRLL WGNFINFLAA WRALAQAWRA KDLRRMAWVK TDHEFPLLGE
GPRQHRALGQ ILVHQGALTE AQLLDALEHP MRGLRLGAAL VHRDVITPQQ LAAAVAEQAG
VPWETLGGQA VDSDLAALVP AAVALRYSVV PLRQQGRVLV VASEAAIDPV SLAAIERKLG
RTVRYVIVPK GEVTVELRRL YAHHGTEPAR DLLAQAVQQQ RVTAEEARGI WARYLSRQLL
LGDVLLAVGK IDQAVLGALL LQKEKSDASL GAFLVEHGVL TESAAQEALQ LQQQLQVTME
QLLCRANAQP TVRAIA
|
|---|
| |