Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtpsy_2117 |
Symbol | |
ID | 7383052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax ebreus TPSY |
Kingdom | Bacteria |
Replicon accession | NC_011992 |
Strand | - |
Start bp | 2270980 |
End bp | 2272050 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643655436 |
Product | type II and III secretion system protein |
Protein accession | YP_002553572 |
Protein GI | 222111308 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.27338 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGCTGCTG CTCGCAACGG CACGCAGATC AACTATGAAG TGACGGTGAG CGCGGACCAC CATGCCAAGA CGGCCATGGA ACTGCGCCAA CTGCTGAGCC ATGACAAGGG CATCAACGTT AGTGCCGTTG GCGACAAGGT CGTGCTGGAC GGCATGTATG CGAACCAGGA CTCGGCCGCC AAGATCCAGA AGATCGTCAA GGCTTATCCG CAGGTGCTCA ATCTGGTGCG CGAGCGGCCC GAGGATCAGT TGGTGGTGCC CGAGCAGATG GTGCAGTTGG ACGTGAAGGT GGTCGAGGTG CGCAAGCAGG CGCTCGACAA CATCGGCGTG AAGTGGAGCA ACCTGGGCGT GGCTGGCCCG ACGTTTGCCA CGTCGGGATA CTTCTATGCC AACTCGGCCA ACTTCCGGGG ACTGAACCAG GAGGGATACC CCATCACTAC GCCGGCGCGA CCCTTCATCT CCTATCTGGG GCTGGCCACG CAGATCACTT CAGTACTGAA CTTCTTGGAG TCCAACGGAG ACAGTTGGAC GTTGGCAGAG CCGCGCATCA GCAGTGTTAG CGGTGGATCG TCAAAGGTGC AGGTGGGTGG CGAGATACCC ATCCCGGTAA GTTCCGGTTT CGGCCAACTG TCGGTGGTCT ACAAACCGTA TGGCGTGATT TTGGAGTTCA AGCCGGTGAT CGACAAGGCG GGCAACGTGC GCTCGTCCAT CGTGGCGGAG GTGAGCCAGC CGGATCGCAG TGCAGGGCAG GGGCAGTTCG TAGCGTTTAC TACCAACCGC ACTGAGACCG AAGTCAGTCT GAAGCAAAAC GAAACGCTGG TGATTTCCGG CCTGCTCAAA AGCGTGGGAG CGCGTAACAA GGAAGGCATT CCCGTCATCG GGCGTGCGCC GGTGCTGGGC CGGCTGTTTT CCACGCAGGA GATGACCAAC GAACAGACAG AGATGCTCGT GGTCGTGACG CCGCGCATCC ATACGCCGGC GGCAGACCGT GCCCAGGTGC TGGCGAGCGA GAACGCTTAC CAGCGCTTGA ATGAAGTCAA GGACATGATC GAAAGCAAGC TGGCACGCTG A
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Protein sequence | MAAARNGTQI NYEVTVSADH HAKTAMELRQ LLSHDKGINV SAVGDKVVLD GMYANQDSAA KIQKIVKAYP QVLNLVRERP EDQLVVPEQM VQLDVKVVEV RKQALDNIGV KWSNLGVAGP TFATSGYFYA NSANFRGLNQ EGYPITTPAR PFISYLGLAT QITSVLNFLE SNGDSWTLAE PRISSVSGGS SKVQVGGEIP IPVSSGFGQL SVVYKPYGVI LEFKPVIDKA GNVRSSIVAE VSQPDRSAGQ GQFVAFTTNR TETEVSLKQN ETLVISGLLK SVGARNKEGI PVIGRAPVLG RLFSTQEMTN EQTEMLVVVT PRIHTPAADR AQVLASENAY QRLNEVKDMI ESKLAR
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