| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1570 |
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| Symbol | |
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| ID | 7382497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | + |
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| Start bp | 1654602 |
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| End bp | 1657883 |
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| Gene Length | 3282 bp |
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| Protein Length | 1093 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643654885 |
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| Product | conjugative relaxase domain protein |
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| Protein accession | YP_002553030 |
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| Protein GI | 222110766 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family
[TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTTCGA TGAAATCAAT TAAATCTGGT GGCGGCGTTT CCAAAGTCGC AGCATATTAC
GAGGGCTACC AGCTGGGCGC AGAAGACCCC AACGCTAAGC AACACGACGA ACCCAACGGA
AAATGGATTG GCGCATTCTC CGAGCGCCTG GGCTTCAAAG ATTCCATCGT TCATCGTGGC
GAGATCGAAA GCGCGCTGAA GGGCTACGAC CCTAAAACCG GCAATCCGTT TTCCAACAAC
GCCGGGGATG AACGCCACAA GCCAGGCTAT GACCTGACAT TTTCCGCGCC CAAATCCGTT
TCCGTCGCCT GGGCGAGTGC ATCGCCCGAG CTGCAAAGGG AAATCAGCGC GGCACACCAA
CGCGCCATTG AATCGGCAAT CGAATACGCC GAGCAAACCG GGGGCGCATT CATCCAGCGC
GAGGGACACG CCGGGGCAAT CAAAGTCCCC CATCACGAAA TCGCCGCCGC CACGTTTGAA
CACAGCAGCA ACCGCGCAGG CGAGCCGCAT TTGCACACGC ATTGCGTTGT GATGAATATC
AGTGAGAACG GCAAGCGCGT CGATTTCGAC ACCCGCTATG CACACACCAT CGGCACCGCC
TATCGTGCCG AGTTTGCCCA CGAGCTGGAA AAGCTGGGTT TCCAAATCGA GAAAGACGGC
AAATCGTTTC GCCTTGACGG ATTCCCGAAA GAGTTGGAAC AGCAGCTTTC CACCAGGGCC
GCACAAATCG CCGAGCGCCA GGCGCAGACC GGAATGAAAA GCGACAAAGC CCGGGAAATG
CACCAGTTGG CCACGCGCGA AATGAAGGGC GAGCGCCCCC GCGAGACAGC ATTTAATGCC
GCCCGCGAAG CAGCAGCAGA AAACGGGTTC AACGTCGAAT CTCTGCGCGA CCAGTCGCAC
CAGGCTAGCC AGGGCAAAGA GCCGCCCGCG CAGCTGCACG AAACCGCATT CAGCGAAGCC
TCAACCCTCA GCCGCGCACA ACTGGAGCGA GCCGCATTTG AACGCGCCCA GGTCAATGGC
CAAGACATTA AAGCGGCACT GTCAGAGCTG CGCGAGCTGG AGCAGTCCGG GGAGCTGGTG
CGCCTAAAAG ACAAGGAGGG CAACGACCGT TTTACCAGCC GCGAAATGCT CGAAATCGAA
ACCGGCCTGG CGCAATATGC CAAAGCCGCT GCGCACACGC CAACCGACGC CCGCGCGGAT
TCGCGCAACG TCGAAGACCT AATTCAAAAG AAAGGGCTCT CAAACGACCA GGCGCAGGCC
ATGCGCCACA TTACCGACAG TCGCAACAGC TTTGCGGTTG TCGAAGGCAC GGCCGGGGCG
GGCAAGTCCT ACATGCTGGG CGCCGCCCGC GAAGCCTGGG AGGCCAGCGG TTCCCGCGTT
GTCGGCTGCG CCCTGGCCGG CAAGGCCGCT AGCGGCCTAG AGGAAGGCAG CGGGATCAAG
TCGGACACGA TTCACGGCAC GCTGCAGCGC ATCGAGCGCG GCGAGCTGCA GCTAGACAAG
CAAACCGTCG TCGTCGTGGA CGAAGCCGGC ATGGCAGGCT CTCGCCTCAT GTCGCGCCTG
TGCGACCAGG CGCAGCAGGC CGGCGCCAAG GTGGTGCTTG TCGGTGACAC CCGGCAACTT
CAGCCAGTGG ACGCAGGCGG AGCCATGCGC AGCATGAAGA CCGCAGCCGG CCAGGCCGCA
GAGATGACCG AGATCCGCCG CCAGCACCAC GAGGCAGACC GCCAGATGGT GACCGACCTC
AAGAACGGCG AGGCCGGCAA GGCGCTGCAG ACTATGCAGG AGCGCGGCTA CCTGCGTGAG
CACGCCACGC CCGAGCATAT GCGCGAGGCC ATCGCGCGCA ACGTCGTCAA CGACCTGCGG
GAGGGGAAGA CCTCAATCAG CCTGGCCGCC CGTCGCCAGG AAGTGCAGGC CATCAATCAG
GCCGCACGCG CCCAGGCCAG GGACGCCGGC CTGTTGCACG GCCCCGACCG CACTTTCACG
ACCCAGCGCA CGCCCGAGAG CGCGGAGCGC GCCCAGGCGT TTGCCGTGGG CGACCGGGTT
ATCACGCTCA AGAACGACCG CAGCCTAGAT CTGAAGAACG GCCAAACCTG GACTGTCACC
GCCGCCCAAG ACGGCCGTTT GACCCTCAAG CGCGACGGGG ACGGCAAGGA GCAGAGCATC
AGCCAGAAGC AATACAAAGC CCTCGATCAC GCCTACTGCG CCACAGTCCA CAAAAGCCAG
GGCGTGACCG TTGACCGTGC CCACGTCGCG CACGACAGCG CCATGAGCGA CCGCAGCCTG
AGCTACGTTG CAGCCAGTCG CCACCGCGAG GCCATGAGCT ACCACCACAC CAACGCGCAA
CGCGACGAGC TGCATAAGGA GATGAGCCGC GCCCGCGACA AGGACACCAG CGCCGACTAT
GAGCGCGCCC AGCCGCCAGG CCACGACGGG CCAGGCCCCG AGGGTGGCGC CGCAGCCAAG
GGCAAACAGG CCGAGCAAGA GCACGACGAC GAGCAGCCAC GGCGCCCGCA GACCGACGCG
GAGCGCCGTC AGGAGCATGA AGCATGGGCA GACCGCGACC GCGACCGCGC GCAGGACTAC
CAGCGCGACC AAGCCGAGCG CGCCGCAGAG CGCAGGCCGC AACAGGCGCA GCAGCCGCGT
GAGCTGATAC GCGACCGGCG CACGCCCGAG CAGCGCGAGC ACGACGCGGA TCTAGCACGC
GCAGCGCTCA AGACCGGAGG CACGATGCCC CAGGCGGCGA AGATCAACCG CGACATTGAG
AAAGGCCGCG CCCGGTGGGA GTACAACAGC CAGGGCGACC GCTTTTTGCA GTATCGGGAC
GGGCGCACGT ATCACCGCGA CCTGCACGCA CGCGGGCCGC AGTCCGTAGA GCTGCGGCAG
GCCGCTACGC TGGGCCTGAC CACCAAGCGC GCAACCATCG TCACCCGTGG GGGTGCTGAC
ATGGCCAACC CCGAGAGCCA ACACGCCGCC GCCAACGCAG GCCCACGCGC GCCCAGCGCT
GGCGAGCGTT GGATCATGGC TGCGCGCGAC GACTACAAGC AGAACAAGCA ACCGGCTTTC
CAAGACGGCC GCGGACGTGC AGAAGCAGGC GACGACGGTG CGCGGCATCA ATTCCAACGT
GGGCGGCCTG CAAGCCCTGG CGAGCCAAAA CATGCAGGTT CAGGCGTTAC TGGGGGACAT
CTCCAGCTCG ATCGCCCAGG CCAACGCGAA TGCGGCGATG GAGGCTCAGC GCACGCAGGA
GCGCGAGCAG CAGCGCGCCG AGGGAGATGC GAAATTCCGT GA
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| Protein sequence | MLSMKSIKSG GGVSKVAAYY EGYQLGAEDP NAKQHDEPNG KWIGAFSERL GFKDSIVHRG
EIESALKGYD PKTGNPFSNN AGDERHKPGY DLTFSAPKSV SVAWASASPE LQREISAAHQ
RAIESAIEYA EQTGGAFIQR EGHAGAIKVP HHEIAAATFE HSSNRAGEPH LHTHCVVMNI
SENGKRVDFD TRYAHTIGTA YRAEFAHELE KLGFQIEKDG KSFRLDGFPK ELEQQLSTRA
AQIAERQAQT GMKSDKAREM HQLATREMKG ERPRETAFNA AREAAAENGF NVESLRDQSH
QASQGKEPPA QLHETAFSEA STLSRAQLER AAFERAQVNG QDIKAALSEL RELEQSGELV
RLKDKEGNDR FTSREMLEIE TGLAQYAKAA AHTPTDARAD SRNVEDLIQK KGLSNDQAQA
MRHITDSRNS FAVVEGTAGA GKSYMLGAAR EAWEASGSRV VGCALAGKAA SGLEEGSGIK
SDTIHGTLQR IERGELQLDK QTVVVVDEAG MAGSRLMSRL CDQAQQAGAK VVLVGDTRQL
QPVDAGGAMR SMKTAAGQAA EMTEIRRQHH EADRQMVTDL KNGEAGKALQ TMQERGYLRE
HATPEHMREA IARNVVNDLR EGKTSISLAA RRQEVQAINQ AARAQARDAG LLHGPDRTFT
TQRTPESAER AQAFAVGDRV ITLKNDRSLD LKNGQTWTVT AAQDGRLTLK RDGDGKEQSI
SQKQYKALDH AYCATVHKSQ GVTVDRAHVA HDSAMSDRSL SYVAASRHRE AMSYHHTNAQ
RDELHKEMSR ARDKDTSADY ERAQPPGHDG PGPEGGAAAK GKQAEQEHDD EQPRRPQTDA
ERRQEHEAWA DRDRDRAQDY QRDQAERAAE RRPQQAQQPR ELIRDRRTPE QREHDADLAR
AALKTGGTMP QAAKINRDIE KGRARWEYNS QGDRFLQYRD GRTYHRDLHA RGPQSVELRQ
AATLGLTTKR ATIVTRGGAD MANPESQHAA ANAGPRAPSA GERWIMAARD DYKQNKQPAF
QDGRGRAEAG DDGARHQFQR GRPASPGEPK HAGSGVTGGH LQLDRPGQRE CGDGGSAHAG
ARAAARRGRC EIP
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