| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9656 |
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| Symbol | trbE |
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| ID | 7381870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011991 |
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| Strand | - |
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| Start bp | 123567 |
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| End bp | 125630 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643653313 |
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| Product | conjugal transfer protein TrbE |
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| Protein accession | YP_002551484 |
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| Protein GI | 222109219 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.419883 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGACCTACC GTGAACCGGA CACACGCAAA TCCGGACTGG TCAAATACGT CTATGCGGAC
CCCGCATCTC GCGCCACGAG CAATGCCGAT CGCATCCTTG AACATTTCAA AACCTCGATC
CGCGAGTTCG AGCAGTACAT GCAGAACGTC GTTTCGATCC GTCGCATGGT CACTCAGGAA
GTCCCCGATC GCGGCGGCTA TCGCGTAGCC AGATACGACG AACTTTTTCA GTTCGTCCGC
TTTTGCCTTG TGGGCGAAAA CCATCCGGTG CGGCTCCCCG AGATCCCGAT GTATCTCGAC
TACATGGCAA CCGCCGAGTT TCACCATGGT CTGTCGCCCA TGGTCGATGG CCGATTCTGC
CAAATCGTGG CGATCGACGG CTTTCCAGCC GAAAGCTGGC CGGGGATTTT GAACGTTCTC
GATCTTATGC CGCTGACCTA CCGGTGGTCC TCGCGCTTCA TGTTCATGGA CGAGATCGAG
GCGACCCAGC GGCTGGAGCG AACCCGCAAG AAGTGGATCC AGAAAGTACG CCCCTTCACC
GACCAGTTGT TCAAGACGAA TAGCGGTTCG GTGAACCAGG ACGCGCTTCT AATGGTCGGC
GAGGCCGAGG ACGCGATTGC TGCGGCAAAT TCCCGGCTGG TTGCTTACGG CTACTACACA
CCGGTCATCG TCATGTTCGG TGAGGATGAT GCCAAGCTGC GCCGCCAGGC CGAAAGCGTC
CGCCGCCTCA TCCAGTCGGA AGGCTTCGGC GCCCGCATCG AAAGCCTGAA CGCGACAGAG
GCATTCTTGG GCAGTCTGCC GGGGAACTGG TATGCCAACA TCCGCGAACC GCTGATCCAC
ACGCGCAATC TGGCGGATAT GATACCGCTG AATTCGGTGT GGTCCGGAGA GCCGGTCAAT
CCAAATCCCT TCTATCCGGA AAATTCTCCG CCGCTTATGC TGGTGGCTTC CGGCTCGACG
CCATTCCGGC TCAACCTGCA TGTTGGCGAC CTCGGACACA CATTGATCTT CGGGCCGACC
GGTTCGGGCA AATCGACACT GTTGGCGCTG ATCGCAGCAC AATTCCGGCG CTATCAGAAC
AGCCAGCTTT TCGCCTTCGA CAAGGGCCGG TCTATGTATC CGCTCACGCG AGCCGTCGGT
GGCGATTTCT ATGATGTGGG CGCAAGCGAG AACCTTGCAT TCTGCCCCTT ACAGGATCTC
GATACGGACG CCGACAAAGC ATGGGCGGCG GAATGGCTCG AAACGCTCAT CATCATGTCT
GGCGAGACGG TGACGCCTGA CCATCGCAAT GCAATCGCGC ATCAGCTCGA CCTTATGTCG
AAGTCGGAAC GCCGCTCGAT TTCCGATTTC GTGTCGGGCG TGCAGAAGAA GTCAATCAAG
GAGGCGCTGC GCCACTACAC GGTCGACGGT CCCATGGGCC ATTTGCTCGA CGCGGAACAG
GACAACCTCA AGCTCTCCAA TTTCCAGACC TTCGAAGTCG ATGAACTCAT GAACATGGGC
GAGCGCAACC TTGTCCCGGT TCTGCTCTAT CTGTTCCGGC GCATCGAAAA GCGCCTGACC
GGCGCGCCCA GCCTTATCAT TCTCGATGAA GCATGGATCA TGCTCGGTCA CCCTGCGTTC
CGCGACAAGA TCCGCGAATG GCTGAAAACC CTTCGTCGCG CAAATTGCGC GGTCGTGCTT
GCCACGCAGT CGATCTCGGA CGCGGACAAA TCCGGCATCA TGGACGTTCT CAAGGAATCC
TGCCCGACCA AGATCTGCTT GCCGAACGGT GCGGCTCGCG AAACCGGGAC CCGCGATTTC
TACGAAAAGA TCGGCTTCAA CGATCGCCAG ATCGAAATCA TCGCCACCGC CACGCCCAAG
CGTGAATATT ACGTGGTCTC CCCCGATGGC CGCCGCCTGT TCGAAATGGG CCTCGGTCCT
ATCACCCTGT CCTTCGTCGG CGTCTCCGGC AAGCACGATC TCCAGCGGAT CAGCGAACTT
TACGACCACC ACGGGGATGA GTGGCCGCGC CACTGGCTTC AATCAAGAGG AATCGAAAAT
GCTGCGTCGC TCTTTGCTTC GTAA
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| Protein sequence | MTYREPDTRK SGLVKYVYAD PASRATSNAD RILEHFKTSI REFEQYMQNV VSIRRMVTQE
VPDRGGYRVA RYDELFQFVR FCLVGENHPV RLPEIPMYLD YMATAEFHHG LSPMVDGRFC
QIVAIDGFPA ESWPGILNVL DLMPLTYRWS SRFMFMDEIE ATQRLERTRK KWIQKVRPFT
DQLFKTNSGS VNQDALLMVG EAEDAIAAAN SRLVAYGYYT PVIVMFGEDD AKLRRQAESV
RRLIQSEGFG ARIESLNATE AFLGSLPGNW YANIREPLIH TRNLADMIPL NSVWSGEPVN
PNPFYPENSP PLMLVASGST PFRLNLHVGD LGHTLIFGPT GSGKSTLLAL IAAQFRRYQN
SQLFAFDKGR SMYPLTRAVG GDFYDVGASE NLAFCPLQDL DTDADKAWAA EWLETLIIMS
GETVTPDHRN AIAHQLDLMS KSERRSISDF VSGVQKKSIK EALRHYTVDG PMGHLLDAEQ
DNLKLSNFQT FEVDELMNMG ERNLVPVLLY LFRRIEKRLT GAPSLIILDE AWIMLGHPAF
RDKIREWLKT LRRANCAVVL ATQSISDADK SGIMDVLKES CPTKICLPNG AARETGTRDF
YEKIGFNDRQ IEIIATATPK REYYVVSPDG RRLFEMGLGP ITLSFVGVSG KHDLQRISEL
YDHHGDEWPR HWLQSRGIEN AASLFAS
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