| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9655 |
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| Symbol | trbJ |
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| ID | 7381869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011991 |
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| Strand | - |
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| Start bp | 122804 |
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| End bp | 123592 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643653312 |
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| Product | conjugal transfer protein TrbJ |
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| Protein accession | YP_002551483 |
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| Protein GI | 222109218 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
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| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.279512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTGCGTC GCTCTTTGCT TCGTAATGCC CTTGCCGGTT TGGTCCTCGC CGTCAGCCCA
AGCGTCGTCT TCGCCGGCGC TGCAACGGGT GGGGCGACGG AATGGACCCA GCTTCTCAAC
AATGCCCAGC TTCTCGAACA GTCGGGGCAG GGGGTCGAAC AGATCGCCAA TCAGACACAG
CAGATCGCCC ACCAGGTCAC GCAGATCCAG AACCAGCTCG ACCAGTACCG GACGATGCTG
CAGAACCTCG AAAAGCTGCC TGACACCATC TGGGGCCAGG CTCAGAAGGA CCTCAATCGG
CTTCGTCAAC TGACCCAGCA GGGGGAGGGC ATCGGCTTCT CGATGGCCAA TCTCGACGAC
GTCCTGAAAC AGCGCTTTCC GAGTTTCGAG CAGTTCGCCT CTGGGGTCCA GGGCGGACAG
AACTTCTCTC AGCAATATGG GCAGTGGTCA AAGACCAACC GTGACACGAT CGGCGGCACA
CTCGCTCAAG CCGGGATGAC GGCGCAGCAG TTCGACACCG AACAAAGCAC CATGAAGCAG
TTGCAGGAGC AGTCGCAAAC GTCCGTCGGC CAGATGCAGG CGCTACAGGT CGGCCACTCG
ATTGCCAGCC AGCAGGTCGA ACAGATGCAG AAGTTGCGCG GCCTGATCGC CCAGCAATCG
ACGATGATGG GCACATGGTA TCAGTCCGAG CAGACCGCCA AGGATCTCGC CCAGCATAAG
CGGGAAAGCT TCTTCTCGAG TACCCCGCCG TCGACGTCGG GCGGCCAGAA AATGCAGCCG
CGGTGGTAG
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| Protein sequence | MLRRSLLRNA LAGLVLAVSP SVVFAGAATG GATEWTQLLN NAQLLEQSGQ GVEQIANQTQ
QIAHQVTQIQ NQLDQYRTML QNLEKLPDTI WGQAQKDLNR LRQLTQQGEG IGFSMANLDD
VLKQRFPSFE QFASGVQGGQ NFSQQYGQWS KTNRDTIGGT LAQAGMTAQQ FDTEQSTMKQ
LQEQSQTSVG QMQALQVGHS IASQQVEQMQ KLRGLIAQQS TMMGTWYQSE QTAKDLAQHK
RESFFSSTPP STSGGQKMQP RW
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