Gene Avi_9617 details

Gene Information

• Locus tag: Avi_9617
• ID: 7381955
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011991
• Strand: -
• Start bp: 83757
• End bp: 84449
• Gene Length: 693 bp
• Protein Length: 230 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643653290
• Product: transposase
• Protein accession: YP_002551461
• Protein GI: 222109196
• COG category: [L] Replication, recombination and repair
• COG ID: [COG4584] Transposase and inactivated derivatives

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.106287
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTTTAAGA ACCGCTTGCG CAGGTTGATC CACAGGTCAC GCGCGGGCGA TCTCCGGGCG 
CAACTGCTCG TGTCAGTACC GGAGCAATAC TCCCCAATGT GCCGTTTGAA TCTTCCCCAG 
GTGCTGCGGC CGCTGGTCTT CCGGGGCGCG CCCCGGAAGA CCAGCGGCGC GTCATTGCCG 
ATACTCCTTC CGATGGCCGG AAGGGGGACA TTGGTGATCA AGCTGAGGGA GACGATCATG 
ATCCTGGATC TGCATCAGCA GGGGCTGACA GTGTCAGCTA TCTCCAGAGA AACAGGCATC 
GATCGCAAGA CGGTGCGCAA ATACATAGAG CGGGGCCTCG AGGTCCCGGC TTATGGACCG 
AGAAAGCCTC GCGCGACGTT TATCGATCCG TTCGCTTCAT ATCTGCGGGA GCGGGTGAAG 
ACCTATCCCG GCCTCACTGG TAGTCGATTG CTCCGAGAAC TCCGGGATCG AGGTTATGCC 
GGTGGTTACA CCGCCGTCAC GGACTTTCTT CGTGACGTGC GACCTCCGGC AAATCCAGGT 
TTCGAAGTTC GCTTCGAGAC GCCGCCAGGC GAACAGGCCC AAGTCGATTT CGCCCAGTTC 
CATGTCGTTT TCACCGACGA GCCAATGACG CCAAGGATCG TTCGGTTGTT CTCGATGGTG 
TTGGGTCACA GCCGCCTCAT CTGGGCTCGC TGA 

 

Protein sequence

MFKNRLRRLI HRSRAGDLRA QLLVSVPEQY SPMCRLNLPQ VLRPLVFRGA PRKTSGASLP 
ILLPMAGRGT LVIKLRETIM ILDLHQQGLT VSAISRETGI DRKTVRKYIE RGLEVPAYGP 
RKPRATFIDP FASYLRERVK TYPGLTGSRL LRELRDRGYA GGYTAVTDFL RDVRPPANPG 
FEVRFETPPG EQAQVDFAQF HVVFTDEPMT PRIVRLFSMV LGHSRLIWAR