Gene Avi_9612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_9612 
Symbol 
ID7381952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011991 
Strand- 
Start bp81422 
End bp82090 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content50% 
IMG OID643653287 
Producttranscriptional regulatory protein 
Protein accessionYP_002551458 
Protein GI222109193 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.350752 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACGCGCC AAACCTGCAA TGATTCCACG ACCAGCTATG CGATCTATGA CCGGCTGAAG 
AACAAGGTGA TGTCGTATGA GTTTTCGCCG TCACAGCAGC TTCAACCGTG GACTTTGGCT 
GATGAATTCA AAGTTAGCTC GACTCCCGTC CGCGAAGCGC TGATAAGGTT AGGCGCCGAA 
GGTTTGGTTG CGGTGATGCC CAACAAAGGC TTTTTTATGA AGCCTTTAAA CCCTTCCGAG 
ATATGCAGCC TTTATGTATT GCGTTCGCAA CTGCTGCGGT ACTCTTTACG GTATTTGCTG 
GAGCAAAGCC GCTTCTCTGA CCACCGTTCT TTTGTAACCG TGTGGGAAGA GCGACTTTCA 
GATCTTTCGG CCAGTAGTTG CGCGTTGATT GAAGAGTTCT TCATGGATTG GGTGGACGTT 
TCGAGGGCTC AAGCTTGTGT TGATACTCTT CAAAACACAA ACGAACGCAC CCGATTTATT 
CGCTGTTTGT TCACCGAAGA ACCAGCCCGG TCACGGCGGT ACTTGGGCAT CCTACGGGAC 
TTGGTCCGGC ATATCAAAAG AAGTAACGCA GATGATGCAA TTGATTGCCT GATAACGGAA 
TTGGACTTCA AGGTCACCTC GGTTCCCGCG CTTTGCAACG AAGGCTTGGT GCGGAGCTTC 
AGAAACTGA
 
Protein sequence
MTRQTCNDST TSYAIYDRLK NKVMSYEFSP SQQLQPWTLA DEFKVSSTPV REALIRLGAE 
GLVAVMPNKG FFMKPLNPSE ICSLYVLRSQ LLRYSLRYLL EQSRFSDHRS FVTVWEERLS 
DLSASSCALI EEFFMDWVDV SRAQACVDTL QNTNERTRFI RCLFTEEPAR SRRYLGILRD 
LVRHIKRSNA DDAIDCLITE LDFKVTSVPA LCNEGLVRSF RN