Gene Avi_9596 details

Gene Information

• Locus tag: Avi_9596
• Symbol: traF
• ID: 7381940
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011991
• Strand: +
• Start bp: 69435
• End bp: 69968
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643653275
• Product: conjugal transfer pilin processing protease TraF
• Protein accession: YP_002551446
• Protein GI: 222109181
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4959] Type IV secretory pathway, protease TraF
• TIGRFAM ID: [TIGR02771] conjugative transfer signal peptidase TraF

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAGCGCCC GCCGCAACGC CCTCGCTATC CTTGGCGTCG GGGCCGTATT GATCGGCGGT 
ATCGCCGGCA CATTTGCGAT TGGTGGTTAC CGCATCAATT TTACGCCGTC ATATAACCTT 
GGCCTATGGC AGATCGGCGC TCTGGATCGA GAGGTTCGGC CAGGGGATCG AATATTTATC 
TGCCCACTCG CTGGCGCAGC CGTGTCGCTG GCACTTGAAC GTCACTATCT CCCGCGAGGG 
CTATGCCCTT CAGGTAGCGG TCCGCTCATC AAAACCGTGG CGGCGACTGC AGGTCAGTCG 
GTCGAAATTG GCGGCCAGGT CATCATCGAT GGCAAACCGC TTCATTCATC GCGCGTCCTC 
AAGGCTGACG CAGAAGGACG GCCCATGCCG GTCTATGCCG GCGGCACCAT TCCCGAGGGC 
AAGATTTTTC TACATTCCGA ATTTGTTGGT TCATATGACT CGAGATACTT TGGCCCACTC 
CCGGCCGACG GCGTCCTTGG CCTCGCGCGA GAAATTCTCA CGTTCTCTCC GTAA 

 

Protein sequence

MSARRNALAI LGVGAVLIGG IAGTFAIGGY RINFTPSYNL GLWQIGALDR EVRPGDRIFI 
CPLAGAAVSL ALERHYLPRG LCPSGSGPLI KTVAATAGQS VEIGGQVIID GKPLHSSRVL 
KADAEGRPMP VYAGGTIPEG KIFLHSEFVG SYDSRYFGPL PADGVLGLAR EILTFSP