| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4393 |
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| Symbol | hemE |
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| ID | 7387965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3725137 |
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| End bp | 3726177 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643653035 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_002551206 |
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| Protein GI | 222150249 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTTTGA GCGCTGAAAA CCGTAAAGTC CTGAAAGTGC TTGAAGGCCA GAGCCTTTCA
CCACCGCCAA TCTGGCTGAT GCGTCAGGCT GGCCGCTATC TTCCCGAATA TCGTCAAACG
CGGGCACAGG CCGGAAGTTT CCTCGATCTC TGTTATTCAC CCGAACTGGC GACGGAAGTC
ACGCTCCAGC CAATCCGCCG TTACGCATTC GATGCTGCCA TTCTGTTTTC CGACATTCTC
GTCATTCCCG ATGCCCTGAA TCGAAACGTC ACCTTCACCG AAGGCAAAGG CCCTGAAATG
ACGCCGATCA CCGCAGATGA GATTCTGGCT TTACCCGAAC AATCGGTTTT CCCGCATCTG
AACCCGGTGA TCGAAACAGT GTCGCGATTG CGCCAGACAT TGCCGGATGA AACCACTCTG
CTTGGATTTT GTGGTGCCCC CTGGACTGTG GCAACCTATA TGATCGCCGG GCATGGCACA
CCCGACCAGG CCCCGGCCCG GCTGTTTGCC TATCGTCATC GCCAGGCTTT CCTGCGGCTT
CTAGATCACC TCGCTGATCT TTCTGCCGAA TATTTGCAGG CCCAGATCGA TGCTGGTGCA
GATGCGGTGC AAATCTTTGA TTCCTGGGCT GGGGTTCTGG GCGAAGAGGA ATTTGCAGAT
TTTTGTGTCA AGCCGGTCAA ACGGATCATC GACAAACTGC GTCTCAGCCG TCCCGACGCG
AAAATCATCA GTTTTGCGAA AGGGGCTGGA ACACTCCTGA AGGATTACCG TCGCCGGACC
GGAGCTGATG CAATTGGGCT GGATTGGAGT GTGCCTTTGT CTTTTGCCGC CGAGTTGCAA
AAAGACGGAC CTGTTCAGGG TAATCTCGAT CCGATGCTGG CGGTTGCCGG TGGTCAGGCG
ATGCGTGATG GCATAGACCG GATCCTGGAT CGGCTCGGGA CCGGTCCGCT GATCTTCAAT
CTGGGCCATG GGATTACCCC ACAAGCCGAT CCGGAAACGG TGCGAGAGCT GGTGCAGCAT
GTCAGGCAAA AGGTGCAATG A
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| Protein sequence | MTLSAENRKV LKVLEGQSLS PPPIWLMRQA GRYLPEYRQT RAQAGSFLDL CYSPELATEV
TLQPIRRYAF DAAILFSDIL VIPDALNRNV TFTEGKGPEM TPITADEILA LPEQSVFPHL
NPVIETVSRL RQTLPDETTL LGFCGAPWTV ATYMIAGHGT PDQAPARLFA YRHRQAFLRL
LDHLADLSAE YLQAQIDAGA DAVQIFDSWA GVLGEEEFAD FCVKPVKRII DKLRLSRPDA
KIISFAKGAG TLLKDYRRRT GADAIGLDWS VPLSFAAELQ KDGPVQGNLD PMLAVAGGQA
MRDGIDRILD RLGTGPLIFN LGHGITPQAD PETVRELVQH VRQKVQ
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