| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4374 |
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| Symbol | aviR |
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| ID | 7387949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3703490 |
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| End bp | 3704230 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 643653019 |
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| Product | transcriptional regulator LuxR family |
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| Protein accession | YP_002551190 |
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| Protein GI | 222150233 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.307061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAGTGTCA ATCATCTCAT ACAGTTTTTG GCTGTATCTC AGGGATGCCG AAGTCGCGAG
GAGCTGATCC TAGAATTGGA GAAACTCCTC GAATTTTATA AATTCGATTA TTACGGCCTC
GTGCGCAGTC CCAAACCTGA CCAAAACCCC ATGTCGCTGG TGCTTGCAGG ACGCTGGCCG
GAAAAATGGC CGCAGGTCTA TATCACGAAA AAATTCGTGC TGATCGACCC TGCCATTCGC
TATCTGGCGC AAGCGCAACG GCCGTTCCGT TGGAGCGAAA CGCTGACGGC ATTCAGCCAG
GACCCACATT TCAAACGCAT GCAGCGGATG ATGATGGATG CCCAGCGCTT TGGTCTCGAG
GAAGGCTATA TCTTCCCCAT CCACGGGCGG GGCGGATTGC TGGCCAACAT GACCATTGGC
GGACGACCGG TGGAACTGAC CCCGATTGAG ATCATGCTGT TCGACACGGT GGCGAAATGC
GCCTTCTGGC GGCTGGCGGA AATCAATGGC GAAGACGAAC TGCTGTCGAT GGTGCAAAAA
GTCGATGTGC GCCTGACCCG ACGCGAGCTT GAAATTCTCA ATTATCTCGG GGAGGGCATG
ACCTCGAACG AGATGAGCAA GTTGCTCGAG ATTTCGAACC ACACCGTCGA TTGGTACGTC
AACGAATTGC AGGATAAGTT GAACGCCAAA AACCGGCAAC ATATGGTAGC AATCGCTTAT
CGACTCGGCC TGATCAGCTG A
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| Protein sequence | MSVNHLIQFL AVSQGCRSRE ELILELEKLL EFYKFDYYGL VRSPKPDQNP MSLVLAGRWP
EKWPQVYITK KFVLIDPAIR YLAQAQRPFR WSETLTAFSQ DPHFKRMQRM MMDAQRFGLE
EGYIFPIHGR GGLLANMTIG GRPVELTPIE IMLFDTVAKC AFWRLAEING EDELLSMVQK
VDVRLTRREL EILNYLGEGM TSNEMSKLLE ISNHTVDWYV NELQDKLNAK NRQHMVAIAY
RLGLIS
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