| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4373 |
|---|
| Symbol | chvA |
|---|
| ID | 7387948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3701463 |
|---|
| End bp | 3703214 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643653018 |
|---|
| Product | cyclic beta-1,2-glucan ABC transporter |
|---|
| Protein accession | YP_002551189 |
|---|
| Protein GI | 222150232 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR01192] glucan exporter ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.111426 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTGT TACAAATTTA CTGGCGAGCC TTGCAATATC TTGCCGCTTA CCGTCTGAAG
GTCAGCATCG TGGTGGCAGC CAATATCATA TTGGCGGTGA TCACCATTGC CGAGCCGATC
CTGTTTGGTT GGATCATTGA CGCAATTTCC AGTGGCAAGC CAGTCAAGGA TATTCTGTTC
CTCTGGGGCG GCTTTGGCAT ATTCAACACC ATTGCTTTCG TGCTTGTCGC CCGCGAAGCC
GATCGGCTGG CGCATGGCCG TCGGGCCAGC CTGCTGACCG AAGCCTTTGG CCGGATCATT
TCCATGCCGC TGTCCTGGCA CCACCAGCGC GGCACGTCCA ATGCGTTGCA TACGCTGCTG
CGCGCCAGCG AGACGCTGTT CGGCCTCTGG CTGGAATTCA TGAGAACCCA TTTGGCCACG
GCAGTGGCGC TCGTGTTGCT GGTGCCGACC GCCTTTTCCA TGGATGTACG CCTGACCCTG
GTGCTGATCG TGCTTGGTCT GATCTATGTG GCGATCGGCA AGATGGTGAT GGACAAGACC
AAGGATGGTC AGGCCTCCGT CGAGAGCCAC TACCACACGG TGTTTTCCCA TGTTAGCGAC
ACGATCAGCA ACGTCTCGGT GGTGCATAGC TATAACCGTA TCCAGGCCGA AACCTCGGCG
CTGAAGACCT TTACCAGCAA GCTGCTCGAC GCCCAGTATC CGGTGCTGGA CTGGTGGGCG
ATTGCCAGCG GCCTCAATCG CATCGCCTCT ACCGCTTCGA TGCTGATCAT CCTGATTATC
GGCACTATGC TGGTGCAGAG CGGCGAGTTG CGGGTCGGCG ACGTTATCGC CTTCATCGGC
TTTGCCAATC TGCTGATCGC CCGTCTCGAC CAGATGCGCC AGTTTTCGAC GCAGATCTTC
GAGGCGCGCG CCAAGCTTGA AGATTTCTAC GTGCTGGAGG ATTCCGTGCA GGATCGTGAT
GAGCCGGTCG GCAATCGCGA CTTGCAGAGC GTGCGCGGCG ATGTCGAATT CCGCCATGTC
TCCTTCGATT TTGCCAATAC GACCCAGGGC GTCAAGGACG TTTCCTTTAC GGTCAAGGCT
GGGCAGACGA TTGCCATCGT CGGGCCGACC GGTGCCGGCA AGACGACGTT GATCAACCTG
CTGCAACGGG TGCATGAGCC GCAGCAGGGG CAGATCCTGA TCGATGGCGC CGATATTTCC
ACCATTACCC GCCAGTCGCT GCGCAACTCG ATTGCGACTG TGTTTCAGGA TGCTGGCATT
CTCAACCGGT CGATTGCCGA TAACATCCGC ATCGGGCGCG AAAATGCGAC GGACGAGGAT
ATCGTCAAGG CGGCTGAGGC TGCTGCGGCC ACCGACTTCA TCGAAAGCCG TCTGTCTGGC
TTCGATACCG ATGTCGGTGA GCGTGGCAAC CGTCTGTCAG GCGGTGAACG GCAGCGTATC
GCCATTGCCC GTGCCATCCT GAAGGATGCG CCGATCCTTG TGCTGGACGA GGCAACCAGT
GCGCTCGACG TGGAGACCGA AGAGCGGGTA AAATCCGCTA TCGACCGGCT GCGCCAGAAC
CGCACGACCT TTATCATTGC CCACAGGCTA TCGACTGTGC GTGAAGCCGA CCAGGTGCTG
TTCCTGGACC ATGGCCGTAT TGTCGAAATG GGTGGCTATG ACGAATTGAG CGCCAAGGGT
GGCCGTTTTG CAGCCTTGTT GCACACCAGC GGCCTGTTGA ACGATGACGA CAAGGTCGCG
GTGAAGGCCT GA
|
|---|
| Protein sequence | MSLLQIYWRA LQYLAAYRLK VSIVVAANII LAVITIAEPI LFGWIIDAIS SGKPVKDILF
LWGGFGIFNT IAFVLVAREA DRLAHGRRAS LLTEAFGRII SMPLSWHHQR GTSNALHTLL
RASETLFGLW LEFMRTHLAT AVALVLLVPT AFSMDVRLTL VLIVLGLIYV AIGKMVMDKT
KDGQASVESH YHTVFSHVSD TISNVSVVHS YNRIQAETSA LKTFTSKLLD AQYPVLDWWA
IASGLNRIAS TASMLIILII GTMLVQSGEL RVGDVIAFIG FANLLIARLD QMRQFSTQIF
EARAKLEDFY VLEDSVQDRD EPVGNRDLQS VRGDVEFRHV SFDFANTTQG VKDVSFTVKA
GQTIAIVGPT GAGKTTLINL LQRVHEPQQG QILIDGADIS TITRQSLRNS IATVFQDAGI
LNRSIADNIR IGRENATDED IVKAAEAAAA TDFIESRLSG FDTDVGERGN RLSGGERQRI
AIARAILKDA PILVLDEATS ALDVETEERV KSAIDRLRQN RTTFIIAHRL STVREADQVL
FLDHGRIVEM GGYDELSAKG GRFAALLHTS GLLNDDDKVA VKA
|
|---|
| |