| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4290 |
|---|
| Symbol | rkpJ |
|---|
| ID | 7387167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3603780 |
|---|
| End bp | 3605084 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643652949 |
|---|
| Product | capsular polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_002551120 |
|---|
| Protein GI | 222150163 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3562] Capsule polysaccharide export protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACAAAGC GACGCACATT TCTGTTTCTC CAAGGCCCGG CCTCGCCGTT TCTCCCAGCG
CTCGCAAGAG CATTGGAAAC GCGCGACGTA GCCGTGGGTA AGGTCAATTT TTGTTCAGGT
GATGTCATTT TCTGGAGAAA ATGGCCTTTT GATTTTTTTC GTGGCCGGGA TGATGCCTGG
CCCGGCTTTC TTGAACGCCT CATTCTGCGT CACGGTATTA CCGATGTGCT GATGCTGGGC
GATGGCCGGC CCAAACACGC TGCCGCCGTT GCGCTATGCA CCAGGCTTGG TCTGCGCGCC
CATATTTTCG AACATGGCTA CCTGCGGCCT GACTGGCTGA CGCTGGAGCC GTTTGGCATG
TCCAGCCAGT CGCGGTTTCC AGTCGATCCG CAGGCAATCG CGGCGTTGGC GCAGGGCGTC
GAGGCTCCTC AGCCGCGTAG CCCCTATCCG TCCAGCTTTC TCACTTATGC GCTTTATGAC
CTGATCTATC ATATCCCGAA TGTCGCGCTC GGCTGGCTGC TGCATCCGCA TTACAAGGCG
CATGGTCCTG TCCATCCCGT CGTGGAATAT AGTGGCTGGA TCATTAAGGG CCTGACCGCA
CGCAGGCGAA AGGCGCAAGC AGTGCGCCTG CAACAGCGCT ATCTGGCGAC GGACAGAGAG
TTCGACTTCT ATCTTTTTCC CCTGCAATTG CCGGGGGACT ATCAGATCCG CCGCCATGCG
CCGATGGGCG ACCTGTTTCG CATCCTGCAA GCCGTGATCC GTTCCTTTGC CGACCGTGCG
CCATCCGGCA GCAGACTGCT GTTCAAGACC CATCCAATCG ACAATGGCCT GCGCGACTGG
TCATCAGACA TCGCCCGCAT GGCGGAGCGC TGTGGTATCG CCAATCAGGT GGATGTGATC
GATGGCGGTG ACCTGACGGC CCTGATAGGG GCCAGCCGCG GCTTGGTGAC GGTAAACTCC
ACGGTCGGCC TGACAGCGCT GCAACAAGCC ATCCCGGTCA TGGCGCTTGC ACCGGCAATC
TACGACGTAC CCGGCCTCAC GCACCAGCAA AGCCTCGCCA GCTTCTGGCA GGCACCCGAA
TTGCCTGACG CCACCCTGCT CAATCGCCTG ATCCGCGCCA TGACTGCCAC CATCCAACTC
CCCGGCGGCT TCATCGGCAA GCAGGCGATT ACCGACGGTG CCACGGCAAT GGCCGACAGA
CTGCTGGCCG AAACAAAACC ACTTGCCCAC GAACCTTCAC CCGAACGCAG CCGTTTTCGG
TATGAGAGTG AGCTTTTGGA ACTGGAGGCA GTGGGATTGA GGTAA
|
|---|
| Protein sequence | MTKRRTFLFL QGPASPFLPA LARALETRDV AVGKVNFCSG DVIFWRKWPF DFFRGRDDAW
PGFLERLILR HGITDVLMLG DGRPKHAAAV ALCTRLGLRA HIFEHGYLRP DWLTLEPFGM
SSQSRFPVDP QAIAALAQGV EAPQPRSPYP SSFLTYALYD LIYHIPNVAL GWLLHPHYKA
HGPVHPVVEY SGWIIKGLTA RRRKAQAVRL QQRYLATDRE FDFYLFPLQL PGDYQIRRHA
PMGDLFRILQ AVIRSFADRA PSGSRLLFKT HPIDNGLRDW SSDIARMAER CGIANQVDVI
DGGDLTALIG ASRGLVTVNS TVGLTALQQA IPVMALAPAI YDVPGLTHQQ SLASFWQAPE
LPDATLLNRL IRAMTATIQL PGGFIGKQAI TDGATAMADR LLAETKPLAH EPSPERSRFR
YESELLELEA VGLR
|
|---|
| |