| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4248 |
|---|
| Symbol | |
|---|
| ID | 7387166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3570337 |
|---|
| End bp | 3571632 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643652916 |
|---|
| Product | MFS permease |
|---|
| Protein accession | YP_002551088 |
|---|
| Protein GI | 222150131 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGAGGAC ATGACTTGGT TTCCGAAAAA GCACTGATTT CAAAAATCAC CTGGCGGCTG
ATGCCGTTTC TGGGGCTTCT CTACCTGATT GCCTATATTG ATCGGCAGAA TGTCAGTTAC
GCGAAATTGC AAATGGTCGA TGCGCTGGGC CTCAGCGAAT ATGCCTATGG GTTGGGGGCG
TCGCTGTTCT TTATCGGCTA TTTTCTATTT GAAGTGCCGA GTAACCTGTT TCTTGAGCGG
TTTGGCGCCA GCCGCTGGTT TGCGCGCATT CTGGTGTCCT GGGGAGCGGT GACCATTGCG
CTTGCCTATA CCCAGAACGC GACGATGTTC TACATCCTGC GCTTTCTGCT GGGTGTCTGC
GAGGCAGGTT TCTTTCCGGG CGTGCTCTAT CTGCTGACGC TGTGGTTCCC AAGGGATTAT
CGTGGCCGGA TGGTTGGCCT GTTCATGATT TTCAGCGCCC TTGCCAATGC TATTGGTGCG
CCCTTGGGCG GCGTGTTGCT CGATCTCGAT GGGTTCCTGG GCTATCAGGG TTGGGAGTGG
GTGTTCCTGG CGACCGGTAT TCCCGCGGTT CTGGCTGGTA TCGTCACCTG GTTTTATCTC
GCCGATACGC CAGCCAAGGC GCATTTTTTG ACGGACGCGG AAAAAGCCTG GCTTCAGGCC
CGGCTGGATG CCGAAAACAC CGGAATGGAC GCGAATGCCG ACAATGGCTT CAAGGCATTG
ATCAATCCGC GCGTGCTGCT GATGTCGCTC TGCTATGTCG GCTTTCCACT CGCCGCTTAT
GGCTTGAGCT ATTGGCTGCC GACCATCGTC AAGGGGTTTG GCGTGTCGAA TACGGTGAAT
GGCCTGATCA ACATCATCCC CTGGGTTGCT GTTGCCATCG CGCTCTATGT TGTGCCATCG
GCGGCTGACC GGACGGAGAA CAAGACGCCC TATATCGTCA TACCGGCCTT TGTCGGTGCC
GTCAGTCTTG TGATGTCGGC AGTGCTGACA GACCAGGTGT TGCAATTTGC GTTTCTGTGC
CTTGCCGCCG CCGGGATCTT CGCAGGCCAG CCGGTGTTCT GGAGCCTGCC ATCGCGCTTC
CTGAAAGGGG CCGGTGCCGC CGCCGGTCTG GCTGCCATCA ACTCGGTCGG CAATCTCGGA
GGGTTTGTTG CCCAGAATGT CGTGCCATTG ATCCGCGACC AGACAGGCAG CACGATTGCT
CCGATGTTCT TTCTGGCAGC CTGCCTCGCC ATTGCTGGCG TGCTGGTCAT TATCATTGGT
AGGGTGATGG GACATAAGCC GATACGGGCG ACCTGA
|
|---|
| Protein sequence | MGGHDLVSEK ALISKITWRL MPFLGLLYLI AYIDRQNVSY AKLQMVDALG LSEYAYGLGA
SLFFIGYFLF EVPSNLFLER FGASRWFARI LVSWGAVTIA LAYTQNATMF YILRFLLGVC
EAGFFPGVLY LLTLWFPRDY RGRMVGLFMI FSALANAIGA PLGGVLLDLD GFLGYQGWEW
VFLATGIPAV LAGIVTWFYL ADTPAKAHFL TDAEKAWLQA RLDAENTGMD ANADNGFKAL
INPRVLLMSL CYVGFPLAAY GLSYWLPTIV KGFGVSNTVN GLINIIPWVA VAIALYVVPS
AADRTENKTP YIVIPAFVGA VSLVMSAVLT DQVLQFAFLC LAAAGIFAGQ PVFWSLPSRF
LKGAGAAAGL AAINSVGNLG GFVAQNVVPL IRDQTGSTIA PMFFLAACLA IAGVLVIIIG
RVMGHKPIRA T
|
|---|
| |