| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4198 |
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| Symbol | dapF |
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| ID | 7386963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3535752 |
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| End bp | 3536663 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643652881 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002551054 |
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| Protein GI | 222150097 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAATC GGGTCGAATT CGCGAAGATG AACGGGCTTG GCAACAAGAT CCTGGTCGTT
GACATGCGCG GCCGTGCCGA CCGGGTCATG CCGCAGGCAG CTATTGCGCT GGCGGGTAAC
GCTGAAACCC ATTTCGACCA GATCATGGCG ATCCATGATC CGAAGCTGGC GGGCACCTTC
GCCTATATTG ACATTATCAA TTGCGATGGC ACGCTGGCGC AGGCCTGTGG CAACGGTACG
CGCTGTGTGG TGCAGGCGCT GTCGGCGGAA ACCGGCCTGA AGGCTTTCAC CTTCCAGACG
CTGGCCGGTA TTCTCAATGC TGTCGAGCAT GACGATAGGA CGGTGTCCGT GGATATGGGC
TCACCTGTGT TCGACTGGAA CCGCATCCCG CTGTCGGAAG AGTTTCATGA TACCAGCCGG
ATCGAATTGC AGATCGGGCC GATTGATGCG CCGGTGCTGC ATTCGCCTGC CGTGATGTCG
ATGGGCAATC CGCATGCGGT GTTCTGGGTG GACCGCGATC CGATGTCCTA TGATCTGGAA
CGGTTCGGGC CGCTGCTCGA AAACCATCCG CTGTTTCCCG AAAAGGCCAA TATTACCTTG
GCGCAGGTCA CATCCAGGAC CACGATGACC ACCCGCACCT GGGAGCGCGG CGCTGGGCTG
ACGCTGGCCT GCGGTTCCGC CGCTTGTGCT GCGGGCGTTT CCGCAGCGCG CACCGGGCGC
GCCGAGCGCA AGGTGACGAT CACCGTCGCC TCCAGCCCCA ACCGCCAGGC CCTCGACATC
GAATGGCGCG AGCGTGACGG GCATGTGATC ATGACCGGTG CGGCAGAATG GGAATGGGCT
GGACAGCTCG ATCCGCAGAC CGGCGACTGG CAGCGTGAGC AGCAGGCTGG CCACGAGGCC
TCCGTCTCGT GA
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| Protein sequence | MGNRVEFAKM NGLGNKILVV DMRGRADRVM PQAAIALAGN AETHFDQIMA IHDPKLAGTF
AYIDIINCDG TLAQACGNGT RCVVQALSAE TGLKAFTFQT LAGILNAVEH DDRTVSVDMG
SPVFDWNRIP LSEEFHDTSR IELQIGPIDA PVLHSPAVMS MGNPHAVFWV DRDPMSYDLE
RFGPLLENHP LFPEKANITL AQVTSRTTMT TRTWERGAGL TLACGSAACA AGVSAARTGR
AERKVTITVA SSPNRQALDI EWRERDGHVI MTGAAEWEWA GQLDPQTGDW QREQQAGHEA
SVS
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