| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4088 |
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| Symbol | |
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| ID | 7388887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3438803 |
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| End bp | 3440665 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643652795 |
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| Product | hypothetical protein |
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| Protein accession | YP_002550968 |
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| Protein GI | 222150011 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0729] Outer membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCGTTTC CAGTTGATGC CTATGCCTTC AAGATTTTCG GGATAACCCT TTGGGGCCGC
GATGAAGGCA AAACGGATGT CGTTGATCCC GTGCGGTATT CTGTCGATTT CCAGTCGAAA
GAAGCGTCCG GCGATCGCGA TGAGAAAGAT GCTTCCGGCG ATCTGAAAGA CGCGCTGGAA
AAAAGCTCGC AGCTGATACA GGAGAAGGAC AAGCCGGTCT CCGGCGATCT TGGCGTGGTC
ATCAAGGCCC GCGAGGACCG GGAGCGGCTA CTGGCAACAC TTTACGAACA CTCCTATTAT
GGCGGCGTCA TTACCATGAC GGTCAATGGC ACGCCCCTGG ATAGCCTGCC CCCCAATCCC
GAATTCCCCC ACACGAAACC CGTGCCGGTT AAAATAGAGG TCGAACCCGG CCCGCTCTTT
ACCCTCGGCA AGGTGACGCT GACCGGCGAT GCCGCAAAGC TTGACCCAAC GGCCTATGAT
CTTGTGGCAG GCAAGCCAGC TGGTTCCCTT GCGATTATCA AGGCGGCTAA CAAGATGGCC
GATGATCTGA AGGCGCAAAG CCGCCCTCTG GCCCGCATTT CCGAGCGGCA GGTGGTCGCG
GACCATCAAA GTAACCGGGT GGATGTGACT ATTGGTGTGT CCGCCGGGCC AGTCGCGCCC
CTGGGTCCGG TTGCAGTCTC CGGCACCAAG GCCGTGGATC CTGGTTTCGT GCAGAAATAT
TCAAGGCTCA ATGCCGGTCA GCCCTATTCG CCGGAAGATC TGCGCAAAGC ATCCGACCGC
TTGCGCAAGC TTAACGTCTT CTCCAGCGTG ACCGTCACCC AAGCCGATAA ACTCAACTCA
CAGGGCGCCA TTCCGCTCAA TATCACCGTT TCGGAAGGCA AATTCCGCTA TTTCGGGGCC
GGGGCAACCT ATGACACCAT CGACGGTGCG GGATTGCAAG GCTATTGGGG CCACCGCAAC
CTGTTCGGCC AAGCCGAATC CCTCAGGATC GAAGGCACAG TCAGCGGCAT CGGCGAGAAA
ACCGATGCAA CGGATTTCGA TTATTCCGCT GGCATCACCT TTACCAAGCC AGGTTTTCTG
TTGCCGTCAG GCACACTGGA AGCCTCGATC AAGGCCGCAA CACTTAGCAC CGATTCCTAT
GATGCCGACA CCATCACCGG CAAACTCGGC TATTCCTATG AGTTGACTGA CTATGACACG
GTTTCGGCAG CCACCGCGCT GGAATATGCC CGGATCGACG ATGCCTTTGG CCGAAACGAT
TACCTGACCT TTTCCGTACC TCTCGATTAT GTGCGCGATA CCCGAGACAA CAAAATGAAC
CCGACCACCG GCTACCGCGC CACGCTCAGC GCCGCGCCAA GCTATGAATT CCTCGGCAGC
ACTGTGTTTT CCAATTTCGA AGGGTCGATT TCCGGCTATT ACGGACTTGG CATGGAAGAC
CGGGTGGTGC TGGCGGGCAA ATTGGCGGTA GGGACCTTGT TTGGCACCGG CGGGCTTGCC
GATATTCCAG CGACGCGACG GTTCTTCGCT GGTGGCGGTG GTTCGGTGCG CGGCTATGGC
TATCAAAGCA TTTCGCCCAG AAACAGCGCG GATGACGCCA CCGGCGGGCT TTCCTATATG
ACCGCATCAC TGGAAACGCG CATCGGCATT ACCGAAACGA TTGGCCTGGT GCCGTTCTTC
GACGTCGGCA CCGTGTCCAG CGGGCATGTG CCTGATTTCT CCGATATCAA GGCAGGCGCG
GGCATCGGCC TGCGCTATGC GACGCCGTTC GGCCCGATCC GCCTGGATGT GGCCGTACCG
CTCAATCCCT ATCCCGACGG CGACAAATAC GGCATATATG TCGGTATTGG ACAAAGTTTC
TGA
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| Protein sequence | MSFPVDAYAF KIFGITLWGR DEGKTDVVDP VRYSVDFQSK EASGDRDEKD ASGDLKDALE
KSSQLIQEKD KPVSGDLGVV IKAREDRERL LATLYEHSYY GGVITMTVNG TPLDSLPPNP
EFPHTKPVPV KIEVEPGPLF TLGKVTLTGD AAKLDPTAYD LVAGKPAGSL AIIKAANKMA
DDLKAQSRPL ARISERQVVA DHQSNRVDVT IGVSAGPVAP LGPVAVSGTK AVDPGFVQKY
SRLNAGQPYS PEDLRKASDR LRKLNVFSSV TVTQADKLNS QGAIPLNITV SEGKFRYFGA
GATYDTIDGA GLQGYWGHRN LFGQAESLRI EGTVSGIGEK TDATDFDYSA GITFTKPGFL
LPSGTLEASI KAATLSTDSY DADTITGKLG YSYELTDYDT VSAATALEYA RIDDAFGRND
YLTFSVPLDY VRDTRDNKMN PTTGYRATLS AAPSYEFLGS TVFSNFEGSI SGYYGLGMED
RVVLAGKLAV GTLFGTGGLA DIPATRRFFA GGGGSVRGYG YQSISPRNSA DDATGGLSYM
TASLETRIGI TETIGLVPFF DVGTVSSGHV PDFSDIKAGA GIGLRYATPF GPIRLDVAVP
LNPYPDGDKY GIYVGIGQSF
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