Gene Avi_4002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_4002 
SymbolalkA 
ID7387336 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp3371253 
End bp3371906 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content63% 
IMG OID643652727 
ProductDNA-3-methyladenine glycosidase II 
Protein accessionYP_002550901 
Protein GI222149944 
COG category[L] Replication, recombination and repair 
COG ID[COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGAGA TGATGCGAAT TCGCAACCAA GCGGATCTTG CCACCGGCCT TGAGGCCTTG 
CTGGATATCG ATCCCCGGCT GCATGCCATT GCCCGCGAGG CCGGACCCTT GCCGCTTCGG 
TTGACGGAAC CGGGTTTCGA AGGGCTGGCC TTCATCATCG TCTCGCAAAT GGTGTCACGC 
GCCAGTGCTG ATGCGATTTG GCGGCGGCTG TGTGAGGCGA TGGGAACAGC CGAACCCGCC 
GCCTATTTGG CGCTGGGTGA CGCAGCGCTT TCGCTCGGTC TTTCGCGCGC CAAGCATGCC 
TGCCTGAGCG GTTTGGCCTC TGCTGTCCAG GCTGGTGACA TCGATCTCTT CGCCATCCTC 
GATCAGCCGG TGGAGACCGG TATTGCCGAG CTGACCCGGC TGCGTGGCAT TGGGCTGTGG 
ACATCGGAAG TTTATCTGAT GTTTTGTGGC GGTCACGCAG ATGTGTTTCC GGCAGGTGAC 
GTGGCACTGC GGGCGGCTGT GGGAGATGGC CTTTGCCTTG CCACGCGCCC GGACATCCGC 
GAAACCACCC GAATTGCACT GACCTGGCGG CCATACCGCG CCATTGCGGC ACGGTTGTTC 
TGGGCCTTTT ATGCGGCGCG TTTACGACGC GAAGCAGCGC CGGTGCCGGT CTGA
 
Protein sequence
MAEMMRIRNQ ADLATGLEAL LDIDPRLHAI AREAGPLPLR LTEPGFEGLA FIIVSQMVSR 
ASADAIWRRL CEAMGTAEPA AYLALGDAAL SLGLSRAKHA CLSGLASAVQ AGDIDLFAIL 
DQPVETGIAE LTRLRGIGLW TSEVYLMFCG GHADVFPAGD VALRAAVGDG LCLATRPDIR 
ETTRIALTWR PYRAIAARLF WAFYAARLRR EAAPVPV