Gene Avi_3931 details

Gene Information

• Locus tag: Avi_3931
• ID: 7387287
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 3297309
• End bp: 3299189
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643652671
• Product: ABC transporter substrate binding protein (oligopeptide)
• Protein accession: YP_002550852
• Protein GI: 222149895
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0747] ABC-type dipeptide transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGCCG CCTTTCTGCC CCGCCCGCTT CTGGCGGCGT CTCATCCAAG TGAACCGGAA 
CTACTGAAAG CCAAGGTCGA GGCTGGTCAA CTACCACCAA TGGCTGAGCG CCTGCCGAAA 
GTGCCGCGTG TCGTGCCCCT TGAAGGGCCT GAGCGAGCGC CCGGACGCTA TGGCGGGACG 
ATCCGCATGT TGATCGGCGG CCAGCGCGAT ATCAGATATA TGCCGATCAA TTGTTACTGT 
CGGCTGATCG GCTATGATCT CGCCTTCAAT TTCCAGCCGG ATCTGCTGGA ACGGTTCGAG 
GTGGTCGAGG AGCGGATCTT TACCTTCCAC CTGCGCGACG GCCATCGCTG GTCGGACGGT 
TCGCCGTTTA CGGCAGAGGA TTTCCGCTAT GTCTGGGAGG ATATGTTCCA TGACAAAAAG 
CTTTACAAGG GAGGAATTCC CACGGTCTTC CGGGTCAATG ACAAGGAGCC GGTCTTTGAG 
GTGCTGGACG CGCTGACCGT TCGTTATACC TGGGAGGACC CTAATCCGGA TTTCCTGGCC 
GAGCTTGCCG CCCCGACCGC AACGCGTCTG ATGATGCCCG GCGCCTATCT CAAGCAGTTC 
CACCACAAAT ACCAGACCAA GGAAAAGCTG GAGGAGCTGG CCATACGAAA CGGCGTGCAG 
GAATGGGTGG CGCTGCATCA GAAAATGTCG CGCATCGTGC GCCCGGAAAA TCCCGATCTG 
CCGACGCTGG ATGCCTGGAT CCCCCGGACC GCCCCACCAT CGGGCCAGTT CATCTTCGAG 
CGCAATCCTT TCTATCACCG GGTGGACGAA AACGGGGTGC AATTGCCCTA TATCGACAAG 
GTGGTGATGG GCGTTGGTTC CGGCGACCTG ATTTCGGCCA AGACCGGCAC GGGCGAAAGC 
GACCTGCAAT TCACCAATCT GGATTTTGCC GATTATACCT TCCTGAAAAA CGCCGAGAAA 
CGCTATCCGA TCAAGGTCGA TCTGTGGAAG CGCACCCAAG GGGCGCGCAT TGCGCTGATG 
CCGAACCTGA ATTGCAAGGA TCTGGTCTGG CGACAGGTGC TGCTTGATGT CCGGGTGCGC 
CGGGCGCTGT CCTTGGCAAT CAACCGCGAA GAGATCAACA AGGCGGTGTT TTTCGGCCTG 
GCTCAGGCTT CGGCCAATGC CATTCTGCCC GAAAGTCCGC TGTTCAAGCC GGAATATCGC 
GATGCTTGGG CTGGGTTCGA CCCCGATCAG GCCAATGCGC TGCTGGATGA GGCGGGCCTT 
GAGCGCCCTG ACCGGCATGG CCTTCGCCTG TTGCCGGATG GGCGCGAGGC GGTGCTGATT 
GTCGAGAGCA CCGGGGAAAG CTCCTTCGAT TCCGACGTGC TGGAACTGAT CACCGATCAC 
TTCCGCAAGA TCGGTTTCCG GCTTTTCGTG CATATCTCGC ATCGCGAGCT GTTTCGCCGC 
CGCATCACCA ATGGCGAGAC TGTGATGGCC GTCTGGCAGG GATTGGACAA TGGCGTGCCG 
ACCGCCGACA TGTCGCCACG CGAATTGGCG CCGACCAGTG ACGATCAGTT GCAATGGCCG 
CTCTGGGGCC TGCACACGCT GTCGGGCGGT GGCGATGGCC GGGCACCGGA AATTGCCGAG 
GCGCGGGCGT TGCTCGACCT GTTTCGGGCC TGGCGGCAGT CCGATCTGCT GGAGGAGCGC 
ACGGCGATCT GGCATGACAT GCTGCGGCTC TATACCGATC AGGTCTTTAC CATCGGCATC 
GTCAATTCCG CCTTGCAGCC GGTGGTGAAA TCGCGAAAGC TCAGGAACCT GCCGGAAAAA 
GGCCTGTTTG GCTTTGTCCC GACCTCCCAA CTCGGCGTCT ATATGCCGGA TACATTCTGG 
TATGATGAGG ATGCGACATG A 

 

Protein sequence

MSAAFLPRPL LAASHPSEPE LLKAKVEAGQ LPPMAERLPK VPRVVPLEGP ERAPGRYGGT 
IRMLIGGQRD IRYMPINCYC RLIGYDLAFN FQPDLLERFE VVEERIFTFH LRDGHRWSDG 
SPFTAEDFRY VWEDMFHDKK LYKGGIPTVF RVNDKEPVFE VLDALTVRYT WEDPNPDFLA 
ELAAPTATRL MMPGAYLKQF HHKYQTKEKL EELAIRNGVQ EWVALHQKMS RIVRPENPDL 
PTLDAWIPRT APPSGQFIFE RNPFYHRVDE NGVQLPYIDK VVMGVGSGDL ISAKTGTGES 
DLQFTNLDFA DYTFLKNAEK RYPIKVDLWK RTQGARIALM PNLNCKDLVW RQVLLDVRVR 
RALSLAINRE EINKAVFFGL AQASANAILP ESPLFKPEYR DAWAGFDPDQ ANALLDEAGL 
ERPDRHGLRL LPDGREAVLI VESTGESSFD SDVLELITDH FRKIGFRLFV HISHRELFRR 
RITNGETVMA VWQGLDNGVP TADMSPRELA PTSDDQLQWP LWGLHTLSGG GDGRAPEIAE 
ARALLDLFRA WRQSDLLEER TAIWHDMLRL YTDQVFTIGI VNSALQPVVK SRKLRNLPEK 
GLFGFVPTSQ LGVYMPDTFW YDEDAT