| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3887 |
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| Symbol | |
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| ID | 7388567 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3246185 |
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| End bp | 3247252 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643652634 |
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| Product | ABC transporter membrane spanning protein (oligopeptide) |
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| Protein accession | YP_002550815 |
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| Protein GI | 222149858 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCTCTCA CCACAACACA AGCATCTGCC GGTCGCAGGC GCGACCGGCA GTTAAGAGGG
TTCAAGGCAG TTGCGGGATT TTTCGTGACT GTTGCGACGA CTTATCTCGG TCTTCTGGCG
GTCACGTTCT TCATTGGTCG GGTGATCCCG ATTGATCCGG TTCTTGCTGT CCTGGGAGAC
CGTGCGCCGC AGGCGGTTGT CGAACAGACG CGCCGGGCAA TGGGGCTGGA TCAACCGCTC
TATTACCAGT TCTTCGTCTA TCTAAAACAG GTGCTCTCGG GCGATTTTGG CACATCGGTT
CTGACAACCA ATCCTGTCAT GACCGATATC GGCCGGTTTT TCCCAGCAAC TGTTGAGCTT
GCCACGGTCG GCACGATCAT CGGCGCGGTG ATTGGCCTTC CCTTAGGCGT TCTGGCCGCA
GTCAAGCGCG GCAGCCTTGC GGACCAGATT GTCCGGGTCA TCGGTTTGAT CGGCTATTCC
GTGCCAATCT TCTGGCTCGG CCTTTTGGCG CTGCTGTTTT TCTATGCCAA GCTGCAATGG
GTGGCCTATC CCGGGCGGAT GGATGTGGTC TATGAATATG ACCTGATACC CGTCACCGGC
TTTTACCTGT TGGATGCGGC CATGGCAGGC CAATGGGAGA TCCTCTGGGA TCTGTTTCGC
CATATCATCC TGCCCGGCGC ACTGCTCGGC TATTTTTCGC TTGCCTATAT CAGCCGAATG
ACCCGCTCTT TCATGCTCAA CGAACTGTCG CAGGAATATA TCGTGGCGGC TCGCGCCAAG
GGCCTGTCCG AAAGCCGGAT CATCTGGTTC CACGCCTTGC GCAATGCTGC TGTGCCGCTG
CTGACGGTGA TTGCCCTGTC CTATGCCGGG CTGCTGGAAG GCTCGGTGCT AACAGAGACG
ATCTTCTCCT GGCCGGGCAT CGGTCTTTAC ATCACCAATT CGCTGCAAAA TGCCGATATG
AATGCGGTGC TGGGCGGAAC CATCATTATC GGTTCCGTGT TCATCGCCAT CAACATCCTG
TCGGATCTCC TTTACAAGAC CCTTGACCCG AGGACGCGCA GCCGATGA
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| Protein sequence | MALTTTQASA GRRRDRQLRG FKAVAGFFVT VATTYLGLLA VTFFIGRVIP IDPVLAVLGD
RAPQAVVEQT RRAMGLDQPL YYQFFVYLKQ VLSGDFGTSV LTTNPVMTDI GRFFPATVEL
ATVGTIIGAV IGLPLGVLAA VKRGSLADQI VRVIGLIGYS VPIFWLGLLA LLFFYAKLQW
VAYPGRMDVV YEYDLIPVTG FYLLDAAMAG QWEILWDLFR HIILPGALLG YFSLAYISRM
TRSFMLNELS QEYIVAARAK GLSESRIIWF HALRNAAVPL LTVIALSYAG LLEGSVLTET
IFSWPGIGLY ITNSLQNADM NAVLGGTIII GSVFIAINIL SDLLYKTLDP RTRSR
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