| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3882 |
|---|
| Symbol | |
|---|
| ID | 7388562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3241399 |
|---|
| End bp | 3242400 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643652629 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002550810 |
|---|
| Protein GI | 222149853 |
|---|
| COG category | [E] Amino acid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3191] L-aminopeptidase/D-esterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.482216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCCG GCCCTCTCAA CCTGCTGACG GATGTTACCG GTCTTTCGGT CGGTCATGCC
ACCGATCTGG CGCTCGGTTC CGGGGTGACT GTCATCATCT TCGATCAACC GGCCACCGCA
TCCGGCTCGG TGCTGGGCGG TGCGCCGGGT GGGCGTGAGA CGGGTTTGCT CGATCCGGCG
CTGTCCCTGG TCACGCAGGT CAATGCGCTG GTCCTGTCGG GCGGTTCCGC CTTTGGGCTG
GATGCAGCGG GCGGCGTGCA GGCGGGCCTG CGCCAGATCG GCCAGGGGTT TCCGGTCGGT
GATATGAACG TCCCCATCGT GCCGCAGGCA ATCCTGATGG ATCTGCTGAA TGGCGGCAAC
AAGGATTGGG GCCTCCATTC CCCCTATCGC GAAATGGGCT ATGAGGCCTT TCAGGCCCGC
AGTAGAGGCC GCTTCGCGTT AGGAACAATC GGGGCTGGAA CAGGGGCCAC CACCGCGACG
GTCAAGGGCG GGCTCGGTTC GGCCAGCGCC ATCTCCGCCA GCGGCCATAC CGTGGCGGCC
TTGGTTGCTG TCAATGCGCT TGGCACGGCC ACTATTGGCC ACTCGCGGCA TTTCTGGGCG
GCACCTTTCG AGCAAGACGG TGAATTCGGC GGTCTCGGCA TGCCCTCCTC TTTCAGCCCT
GATGATAGCG CATTGCGCCT CAAGGGCCGC GACCCGATCG CCACCACCAT TGGCGTCATT
GTCACAGATG CTGAACTGAC CAAGGCGGAA TGCCACCGCC TGTCGATCAT GGCTCATGAC
GGACTCGCGC GGGCTCTGCT GCCTGCCCAT CTGCCTGCCG ATGGCGATAC GGTGTTTGCC
GCTGCCACCG GCGAAAAGCC ACTGCCGGAC CTTGCCAGTT TCATGGACCT TTGCCATCTC
GCCACCCTCA CCATGGCCCG CGCCATCGCC CGTGGCGTGT ATGAAGCGCA AGCCCTGCCT
TACGACGATG CCCAACTGGC CTGGCGTGAT CTGGCTGTCT GA
|
|---|
| Protein sequence | MKPGPLNLLT DVTGLSVGHA TDLALGSGVT VIIFDQPATA SGSVLGGAPG GRETGLLDPA
LSLVTQVNAL VLSGGSAFGL DAAGGVQAGL RQIGQGFPVG DMNVPIVPQA ILMDLLNGGN
KDWGLHSPYR EMGYEAFQAR SRGRFALGTI GAGTGATTAT VKGGLGSASA ISASGHTVAA
LVAVNALGTA TIGHSRHFWA APFEQDGEFG GLGMPSSFSP DDSALRLKGR DPIATTIGVI
VTDAELTKAE CHRLSIMAHD GLARALLPAH LPADGDTVFA AATGEKPLPD LASFMDLCHL
ATLTMARAIA RGVYEAQALP YDDAQLAWRD LAV
|
|---|
| |