| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3878 |
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| Symbol | |
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| ID | 7388558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3235331 |
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| End bp | 3236248 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652625 |
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| Product | ABC transporter membrane spanning protein (oligopeptide) |
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| Protein accession | YP_002550806 |
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| Protein GI | 222149849 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGATG CACCCCTCAC CACCCAGGCC AAAGCCGACC GCTCGCAATC CTTCAGTGCC
CAGCTTTGGG GGCAGTTCCG CCGCCATACC GGCGGGGTGA TCGGCCTTGC CGTCTTCGTG
CTGATCGTTC TGGCCGTCTA TGTCGGGCCT TTGATCCACC GCGTCGATCC CAACAAGCTG
AATATCCGCG ACAAGAACCA GGGACCGTCC TGGGTCCATC CGTTCGGCAC CGACAATCTT
GGCCATGATC TGTTCGCGCA GGTTCTGGCC GGCGGGCAGA TCTCGCTGGC GGTTGGCATG
GTGGCCATGC TGATTTCGCT GTTCGTCGGT ACACTGATCG GCGTGCTCTC CGGCTATTTC
AAGCGGATCG ACGGGCCGTT GATGCGCATC ACCGATCTGT TCCTGGCTCT ACCGATCCTG
CCGCTGCTGC TGGTCATCAC CATGCTGTTT CGTGATGTGC TGCGCGCCGC GTTCGGCCCG
GAAGCCGGGA TTTTCATCCT GATCGTCTTC GTCATCGGCA TTACCAGCTG GATGCACACC
GCCCGCATCG TGCGCGGCGA TGTACTGACG GTGAAAAACC AGGAATTCGT GCTGGCCGCC
AAGGCCAGCG GCATGCGGGA ATACCGGGTG ATCCTCAAGC ATATCGTTCC CAATGTGCTC
AGCTCCGTCA TGGTCTCGGC CACACTCGGC ATTGCCTCGG CGATCATCAC GGAATCGGCC
CTCAGCTTTC TCGGCCTCGG CTTCCCCTCC GACTTCCCGA CCTGGGGTCG ATTGCTCTAT
GACGGTGTGA ACTTCCTACA AATCACCCCG GCCCGCGCCA TCTGGCCAGG TCTGGCGATT
TCGCTCACCG TCCTCAGCGT CAACTATATC GGCGATGGCA TCCGTGATGC GCTCGATCCG
CGCTCGATGA AGCGCTGA
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| Protein sequence | MTDAPLTTQA KADRSQSFSA QLWGQFRRHT GGVIGLAVFV LIVLAVYVGP LIHRVDPNKL
NIRDKNQGPS WVHPFGTDNL GHDLFAQVLA GGQISLAVGM VAMLISLFVG TLIGVLSGYF
KRIDGPLMRI TDLFLALPIL PLLLVITMLF RDVLRAAFGP EAGIFILIVF VIGITSWMHT
ARIVRGDVLT VKNQEFVLAA KASGMREYRV ILKHIVPNVL SSVMVSATLG IASAIITESA
LSFLGLGFPS DFPTWGRLLY DGVNFLQITP ARAIWPGLAI SLTVLSVNYI GDGIRDALDP
RSMKR
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