Gene Avi_3870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3870 
Symbol 
ID7388552 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp3226300 
End bp3226938 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content61% 
IMG OID643652619 
Productuncharacterized ABC-type transport system permease protein 
Protein accessionYP_002550800 
Protein GI222149843 
COG category[R] General function prediction only 
COG ID[COG3932] Uncharacterized ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCAGA GAGTGGACAG TGGTGCTGAG CAGACGGAGG CCCTGCCGCT TTCGCAGATC 
CTGTTTCGGA TTGCTGAGGA TGAAACGAGG GCGCGGGTCT CGATTGGTGA TATTTTCGAG 
GCGCTCGGCG ACCGGGCTTT TGGCGCGTTG ATCCTGATCT TCGCGCTTCC CAATATCGTG 
CCGACCCCGC CTGGCACGTC GGCCATAACA GGCGCGCCTT TGGTCTTTCT GGCGGCGCAG 
TTGATGCTGG GCTGGCAGCC CTGGCTGCCC GGCTGGATCA CCAAACGCTC GCTGGCGCGG 
GCCGATTTTT CCGCCATCGT CGCCAGGATC GTACCCTGGC TTGCCCGGGG CGAGCGGCTG 
CTGAAGCCGC GCTTTGGCCT GCTGGTAAGC GGACCGGCGG AAAACATCCT AGGGATCATG 
GCTTTCATTC TGGCCATCAT TCTCGCATTG CCCATTCCGC TCGGCAATAT CCTGCCGGCC 
ATTGCCCTGT CGCTGTTTGC CTTCGCGCTT CTGGAGAAGG ACGGGCTTTA CGCTGTGGTG 
GGCAGTGTGG TGTTTCTTCT GTCGATTGTG GTCGTCGCGG GCGTGATTGT GGCGCTCGGC 
AAGGCGGCCT TATTGCTGTT CAGCATATCC TTTGGCTAA
 
Protein sequence
MDQRVDSGAE QTEALPLSQI LFRIAEDETR ARVSIGDIFE ALGDRAFGAL ILIFALPNIV 
PTPPGTSAIT GAPLVFLAAQ LMLGWQPWLP GWITKRSLAR ADFSAIVARI VPWLARGERL 
LKPRFGLLVS GPAENILGIM AFILAIILAL PIPLGNILPA IALSLFAFAL LEKDGLYAVV 
GSVVFLLSIV VVAGVIVALG KAALLLFSIS FG