| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3862 |
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| Symbol | |
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| ID | 7388545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3209149 |
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| End bp | 3210519 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652612 |
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| Product | secretion protein-like protein |
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| Protein accession | YP_002550793 |
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| Protein GI | 222149836 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.941945 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAAAA CCTTGACGCT GTCGCCTGAC GAGCATCGTT ACGCGGTCCG TACGACAGCG
GAATTCCTGT CCGAAAGCGC CAGCATCCTG CATCGCACCC CGCCCAAATC GGCGCGGATG
ACGATTGCCA CGGTGGCGGC CCTGATCACC AGCGCGATCC TGCTGTCGGT GTTCATGCCG
GTCGAGCGGG TGGTGACTGC ACGCGGTCGT GTCGCCTCCG AAGCGCCCAA TACCGTGGTG
CAGCCGCTGG AAACCTCGAT TGTGCGGGAA ATCCTGGTGC GCGAAGGCCA GGACGTGAAA
GCGGGGCAAT TGTTGGCCAC GCTCGATCCG ACCTTTTCGC GTGCCGACCA GACCACGGCC
AGCCGGCAGA TGGCCAGCCT TTCGGCGGAA GTCGAGCGGC TGAAGGCGGA AATCGATGGG
CGTGATTACC AGCCGCGCGA CGGCGATAGT TTCGGCAAAT TGCAGCGCCG GTTCTTTGAA
GCCCGCCGGT CGCAATATGA AGCGTCGATG TCGACCTTCA AGGCGAAGAT CTCTTCGCTA
CAAACCACGC AAGCCCAATT GCAGCAGGAA CTCACTGTCA ATCGCCAGCG CTTGTCGCTC
AGCGAGGAAA GCGAGGCGAT GAAAAGTGCG CTGGTCGAGA AGAAATATGC CTCCAGGGCC
GATGGTCTGA AGGCCAAGGA CTGGGTGCTG GAAGTCACCG GCACGATCCG CGAAGTCGAA
GGCAAGCTGG AAAGCGGCGC CCATGACATT CAGTCGGTGC AGTCGCAGAT GGAAGATCAG
GCCCAGCAAT GGCGCTCCGA CGCCATGGGC CAGCTGGTCA AGCAGCAGGT GGCGTTGAAT
GCAGCCATCG AGGAGCTGAA CAAGGCTGAC AAGCGTTCCG ACCTGATCGA ATTGAAGGCG
CCGGAAGACG CAACCGTGCT TCAGATCGGC GATATTTCTA TCGGCTCGGT GGCGCAGACG
GCACAGAAAA TGTTCGTGCT GGTGCCCAAG GCAGCTCGGC TTGAAGTGGA AACGGAAATT
TCCACCCAGG ACCAGGGCTT TATCAAGGTT GGCCAGCCGG TCGATATCAA GCTCGATGCC
TGGCCTTTCG CCCGCTTTGG CGGCTTGCGC GGCACAGTCC GGGCTGTCAG CCCTGATAGT
CTGAAAGTCT CGCGCGGCGA CGGCGCGGCA ACGCAAGGCG CATCCGAGCG GACATTCTAT
ATCGCCAAGA TCACCATTGA CGACCCGCAT CTGAAAAGCA ATCCGGCGGA TTTCAGCCTG
ATTGCCGGGA TGACGCTGGT GACGGACGTG GTTGTTGGCG ACCAGACTGT GGCGGCCTAT
CTGTTTGACC GGGTTGTGCC GGTCGTGAGC GAGGGAATGC GCGAACCATG A
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| Protein sequence | MTKTLTLSPD EHRYAVRTTA EFLSESASIL HRTPPKSARM TIATVAALIT SAILLSVFMP
VERVVTARGR VASEAPNTVV QPLETSIVRE ILVREGQDVK AGQLLATLDP TFSRADQTTA
SRQMASLSAE VERLKAEIDG RDYQPRDGDS FGKLQRRFFE ARRSQYEASM STFKAKISSL
QTTQAQLQQE LTVNRQRLSL SEESEAMKSA LVEKKYASRA DGLKAKDWVL EVTGTIREVE
GKLESGAHDI QSVQSQMEDQ AQQWRSDAMG QLVKQQVALN AAIEELNKAD KRSDLIELKA
PEDATVLQIG DISIGSVAQT AQKMFVLVPK AARLEVETEI STQDQGFIKV GQPVDIKLDA
WPFARFGGLR GTVRAVSPDS LKVSRGDGAA TQGASERTFY IAKITIDDPH LKSNPADFSL
IAGMTLVTDV VVGDQTVAAY LFDRVVPVVS EGMREP
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