| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3834 |
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| Symbol | |
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| ID | 7388525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3185893 |
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| End bp | 3186933 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643652592 |
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| Product | transcriptional regulator LacI family |
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| Protein accession | YP_002550773 |
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| Protein GI | 222149816 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0515953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCCA CGGTTCATGA CATTGCGGCA CAGGCGGGCG TCAGTTTGGC GACGGTGGAC
CGGGTTTTGA ACAATCGCAG CGGCGTCAGT GCTTCGACCC GCGCCCGCGT GGAAAGCGCC
GTCGGCATGC TTGGCTATGT TCGGGATTTG GCGGCTGCCA ATCTGGCCAA AGGCCGGATT
TATCCTTTCA TCTTCATCCT GCCGGCCAAT GACAATTCCT TTATGCACGG TCTGCGCCTG
CAAGTGCTCG ACGCCGCCAG CCGGGCTGGC ATGGAGCGAA CCCGCATCGA TATGATCGAT
GTTGCGGCTT TCGATGCCGC ATCTTTGGTT GCGGCCCTGG ACGATGCTGC GGCCCGCCAA
CCCGCTGGCG TGGCCGTGGT GGCGGTGGAT GCGCCGGACG TGGCTGCGGC GGTCGCGCGG
TTGCGTGCTG CTGGCATACC GGTGGTGACA CTGGTCTCGG ATCTCAGCGG TGCCGAGCGC
GACCATTTTG TCGGCATAGA CAACCGTGCC GCCGGACGCA CGGCAGCCAG CCTGCTTGGC
CGGTTTACCG GCGGACGGCA AGGGACCATT GCAATTGTCG CCGGGTCGAT GCTGGTGCGC
GACCACCGCG ACCGGTTTGA GGGCTTTCGC GCCGTGATGG CGGCTGAATT TCCGCAACTG
ACCTTGCTGC CGGTGCTGGA AGGCCGTGAC GATCCGCATC ATGTCGAAAC CCTGCTGCAC
GATCTGTTTT CGCAATCGCC GAATATAACC GGCCTCTACA GTCTTGGTGC AGGCAATCGC
GGCTTGATCG CGGCATTGGA GCGGCTGGAT GCCGACAGTC GCCCCCTGGT GGTCGCCCAC
GAATTGACGC CGGTGACGAG AGCGGCACTG ATCTCCGGGC TGATTGATGC GGTGCTGAAC
CAGGACGCTG GGCATGAAGT GCGCAGCGCC ATCCGGGTGC TGAAGGCCAA GGCCGATGGC
GCGGCTGTGT TGGCTGCGCA GGAACGTATT CGTCTCGACA TATTTCTCAA AGACAATCTG
CCAGAGCAAG AACAGCGATA A
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| Protein sequence | MKPTVHDIAA QAGVSLATVD RVLNNRSGVS ASTRARVESA VGMLGYVRDL AAANLAKGRI
YPFIFILPAN DNSFMHGLRL QVLDAASRAG MERTRIDMID VAAFDAASLV AALDDAAARQ
PAGVAVVAVD APDVAAAVAR LRAAGIPVVT LVSDLSGAER DHFVGIDNRA AGRTAASLLG
RFTGGRQGTI AIVAGSMLVR DHRDRFEGFR AVMAAEFPQL TLLPVLEGRD DPHHVETLLH
DLFSQSPNIT GLYSLGAGNR GLIAALERLD ADSRPLVVAH ELTPVTRAAL ISGLIDAVLN
QDAGHEVRSA IRVLKAKADG AAVLAAQERI RLDIFLKDNL PEQEQR
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