Gene Avi_3772 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3772 
Symbol 
ID7388227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3138601 
End bp3139410 
Gene Length810 bp 
Protein Length269 aa 
Translation table11 
GC content59% 
IMG OID643652543 
ProductO-linked GlcNAc transferase 
Protein accessionYP_002550724 
Protein GI222149767 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGGCTC TCGGCCTCAC CGCCATGCTG ACGCTTTCCG GATGCCAATC CACCAACCAG 
TCAAGCGACA TGATCAGCAT CGACCGCGAT CAGGGGTCTA AGGAAAATAT TTCCTCGCTG
TCGTCGGTGA TCGCCGCCAA TCCACGCGAC CCAGGCGGCT ATAACGTGCG GGGCTCTGCC
TATGGCCGGG CTGGCGAATT CCAGAAGGCG CTGGCGGATT TCAACACCGC GCTGCAACTC
AACCCGAATT TCTACCAGGC CTATGCCAAC CGCGCCCTTG TCTATCGCAA CATGGGCAAG
CCGGTCGAAG CCGCCAATGA TTATACCGCT GCCCTGAAGA TCAATAGCAG CTATGATGTC
GCCTATATCG GCCGTGGCAA TATCTACCGC CAGGCGGGCC GGGTAGATGA GGCATTTCAG
GATTTCTCCA AGGCAATCGA GCTGGATACC ACCGATGGCC GCGCCTATCA CAATCGCGGT
CTGATCTTCC AGTTGCGCGG CCAGCACGAC AAGGCGATCG ACGATTTTTC CAAGGCGCTC
TCACTGTCAC CGAATGCGCC TGAGCCTTAC AACGGTCGTG GCGTAAGCTA TCTGGCGCTG
AACGACGATG AAAACGCCTT TGCCGATTTC AACCATGCCA TCGACATGAA CCCGAAGCTG
GCCGAATCCT GGGCCAATCA GGCCCTGGTC TATGAGCGGC GCGGCGACAA GGTCAAGGCT
GCCAAGTCCT ACGCCCATGC CTTGAGCCTG GATGGAAAAT ACACGCCCGC CCGCGATGGT
CTTGCCCGGA CACGCGGCTC GACAAGCTGA
 
Protein sequence
MLALGLTAML TLSGCQSTNQ SSDMISIDRD QGSKENISSL SSVIAANPRD PGGYNVRGSA 
YGRAGEFQKA LADFNTALQL NPNFYQAYAN RALVYRNMGK PVEAANDYTA ALKINSSYDV
AYIGRGNIYR QAGRVDEAFQ DFSKAIELDT TDGRAYHNRG LIFQLRGQHD KAIDDFSKAL
SLSPNAPEPY NGRGVSYLAL NDDENAFADF NHAIDMNPKL AESWANQALV YERRGDKVKA
AKSYAHALSL DGKYTPARDG LARTRGSTS