| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3492 |
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| Symbol | |
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| ID | 7388765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2889801 |
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| End bp | 2891429 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652333 |
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| Product | ABC transporter membrane spanning protein (urea/amide) |
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| Protein accession | YP_002550516 |
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| Protein GI | 222149559 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.290236 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATACGAT CCTGTTTGAA CCATCTGTCG CATGTGCTGG CTGCCGGGCT GTTGCTGATG
GTGGCCTTGA CCCTTTCGGC ACGTGCCGAG GAAGACCCCG CTAGCCTGAT CAAGGCGCTG
GGCACGGCCA ATTTCACCGA TGCCGAAAAA ATCGTCGGCG ATCTCGGACG CACTGGCGAT
CTCAAAGTGG TTCCGGCCCT GGAAGCCCTG AGCGGTGGCG ATCTCTATCT GCGCAAGGCC
GATGGCAATG TGTTTATCGC CAAGCCCGCG GGCAGCCAGC TTACGCTGGT CGATCCCTTG
AGCGGTGCCG AGGTCGGCAA GGAAGCCAAG GGCGGGCTGG TCAAGATCAA GATCAATAAC
GGGTTGCGCC GCGCCATCCG CGCCGCACAA GGCGGGCTGA CCCTGCTCAG CCCTGACCGC
ACGGTGCGGC TTGCCGCGGC CGATGCGCTG TTGAAGGCGC CCTCAGAAGA CAATCTCGAA
TTGCTCGACA CCGCCCTTGC CAAGGAGCAG GATAGCGCGG TGAAAACGCT GCTGGCCCAG
GCCCGCGCCG TCTCGGTCAT CACCTCCAAT CATACGCTGG AGGAAAAACG CGCCGCCATT
GCACTCATTC GCGCTGTGGG CGGTCAGGAT GCGATTTCCA TTCTCGGCAA TGCCGCGCCA
ACAGTCGATC CGGCCCTGAA GGGTGATATC GATGCGGCCA TCGCCAAGAT CCAGGGCGAT
GTGGCGCTGT GGAATACCGC GCAGAACATC ACCTATGGCA TCTCGCTCGG CTCGGTGTTG
CTGCTGGCGG CCATTGGCCT TGCCATCACC TTCGGGGTCA TGGGCATTAT CAATATGGCG
CATGGCGAAA TGGTCATGCT CGGTGCCTAT TCCACCTTCA TCGTTCAGCA GGCAATCCGA
GCGAACGCGC CTGAGCTGTT TGACTGGTCG CTGGCCATTG CCCTGCCGGT CGCCTTCGCC
GTCACCGGCA TCTTTGGCCT GGTGATCGAG CGCTGCGTCA TCCGCTTTCT CTATGGGCGT
CCGCTGGAAA CGCTGCTCGC CACCTGGGGC ATTTCGCTGA TGTTGCAGCA GTTGGTGCGC
ACGCTGTTTG GCCCGACCAA TCAGGAGGTT GCCAATCCGT CATGGATGTC CGGCTCGTTC
GGTCTGGGCG GCTTGACCAT CACCTGGAAC CGGCTGTGGA TATTGGTGTT TTCGCTGTCG
GTCTTCTTCG CGCTGCTGAT GCTGTTGAAG CGCTCCGCCT TTGGCTTGCA GATGCGCGCC
GTCACCCAAA ACCGCCGGAT GGCGTCTTCG ATGGGCATTC GCACGCCCTG GGTGGATGCC
TTCACGTTTG CCTTGGGGTC GGGCATTGCC GGAATGGCGG GCGTGGCGCT GTCCCAGATC
GACAATGTGT CGCCCAATCT CGGCCAGACC TACATTATCG ACAGTTTCAT GGTCGTGGTG
TTCGGCGGAG TCGGCAATCT CTGGGGAACG CTGGTGGGCG CTTTCTCTCT CGGCATTCTC
AACAAGTTCC TTGAGCCCTA TGCCGGTGCG GTGCTGGGCA AGATCCTGGT TCTGGTTCTC
ATCATCCTGT TCATCCAGAA GCGGCCACGC GGCCTCTTCG CACTCAAGGG AAGGGCGGTG
GAAGCATGA
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| Protein sequence | MIRSCLNHLS HVLAAGLLLM VALTLSARAE EDPASLIKAL GTANFTDAEK IVGDLGRTGD
LKVVPALEAL SGGDLYLRKA DGNVFIAKPA GSQLTLVDPL SGAEVGKEAK GGLVKIKINN
GLRRAIRAAQ GGLTLLSPDR TVRLAAADAL LKAPSEDNLE LLDTALAKEQ DSAVKTLLAQ
ARAVSVITSN HTLEEKRAAI ALIRAVGGQD AISILGNAAP TVDPALKGDI DAAIAKIQGD
VALWNTAQNI TYGISLGSVL LLAAIGLAIT FGVMGIINMA HGEMVMLGAY STFIVQQAIR
ANAPELFDWS LAIALPVAFA VTGIFGLVIE RCVIRFLYGR PLETLLATWG ISLMLQQLVR
TLFGPTNQEV ANPSWMSGSF GLGGLTITWN RLWILVFSLS VFFALLMLLK RSAFGLQMRA
VTQNRRMASS MGIRTPWVDA FTFALGSGIA GMAGVALSQI DNVSPNLGQT YIIDSFMVVV
FGGVGNLWGT LVGAFSLGIL NKFLEPYAGA VLGKILVLVL IILFIQKRPR GLFALKGRAV
EA
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