Gene Avi_3420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3420 
Symbol 
ID7387034 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp2832165 
End bp2832827 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content63% 
IMG OID643652279 
Producttranscription antitermination protein 
Protein accessionYP_002550463 
Protein GI222149506 
COG category[K] Transcription 
COG ID[COG0250] Transcription antiterminator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGAGC ATAACCGTGA CCGTAACCAA CAGACCGTCA TCTCAAACGA AAGGCTCTTG 
ACGCTGGCGC GTGTCACAGC CGTTGAGGCC AGACGGAAGC GTCAGATCGC CATGGCACGG 
CACGACCGTC CTGACTTCGA TCAACTCGCC CGCTGGGTGG TGGCGCGCTG CAAGAGCGGC 
CTCGAGCAGG TCATCCGCGA TGCGCTGACT GAGCAGGGCA TCGAGTGCTG GTGCCCCTGC 
GAGCGGCGAA GACTGCCGCC CCGCCGCCGC AAGCCGGCGA TCGTCGTCGA GCGGGCGCTG 
TTTCGGGGCT ATCTGTTCGT GCGGATGATC CCGGACAACG AGGCCTATGC CGGGCTCCTG 
CTGGCCTCCA GGCTGCAGAG CCTGATGGGC CGGGATGGCA AGCCTTATCT GATGCCCGAA 
ACGCTGATGC GCCAGCTGCA ATTATCCGCC AAGACTGCGG AGAGACAACA CATGGATGCC 
TGCGGTGTCC CGCCGATGCC TGATATGCTG GGCAAGCAGG TGACGATCCG CTCCGGCCCG 
TTTGCCGATT TCGTGGTGAC GGTGCGCAAG GTACTGTCGA AGCGGGGCCA GGTGGTGGTT 
GACGTTCCGA TGTTCGGTGG CATGAGTGAG GTCACTATGG GTGTGGATGC CATCGAGGGG 
TGA
 
Protein sequence
MMEHNRDRNQ QTVISNERLL TLARVTAVEA RRKRQIAMAR HDRPDFDQLA RWVVARCKSG 
LEQVIRDALT EQGIECWCPC ERRRLPPRRR KPAIVVERAL FRGYLFVRMI PDNEAYAGLL 
LASRLQSLMG RDGKPYLMPE TLMRQLQLSA KTAERQHMDA CGVPPMPDML GKQVTIRSGP 
FADFVVTVRK VLSKRGQVVV DVPMFGGMSE VTMGVDAIEG