| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3414 |
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| Symbol | |
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| ID | 7387029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2827256 |
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| End bp | 2828398 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643652274 |
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| Product | phosphonopyruvate decarboxylase protein |
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| Protein accession | YP_002550458 |
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| Protein GI | 222149501 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
[COG4032] Predicted thiamine-pyrophosphate-binding protein |
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| TIGRFAM ID | [TIGR03297] phosphonopyruvate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTCGG CTGACAGCTT CATCGATACG GCTATCTCGA ACGGATTTTC ATTTTTCTCC
GGGGTTCCAT GCAGCTATCT CTCGCCACTG ATCAACCGAG TGATCAGCCG GCGCGATGCA
AACTACGTTG GTGCAACGAG TGAAGGTGAG GCCGTTGCAA TCGCGGCTGG AGCTTGGTTG
GCCGGAAGGC AAACAGTAGT AATGTGCCAA AACTCCGGTC TCGGGAATGC AGTGAATCCG
TTGACCTCAC TCAACTACCC ATTCCGGATA CCGACGCTGT TAGTTGTGAC CTGGCGCGGA
AAACCTGGCG AGGCTGACGA GCCTCAGCAT GTTCTAATGG GCAGAATTAC CAAAGAGCTG
CTGGCGGTCA TTGATGTTCC GTCGGACGAG TTTCCAGCGC TGGAAGCCAA TATTGGACCT
GCTCTCCAAA ACGCCCGAAA CCGAATGGCG ACATCGAGTC TCCCGTTTGC CATGATAATG
TCCCGTGATG CTGTCGCTAA TTCGGCGCTT GATGAGGTTT CAATTATAGA GCGCGGTGTA
TCAGGCCCAA ATACAAACCT CACCATCGGG GGCCACAGAC CGAGTCGGCA TGCGGTGCTG
GAAAGGCTTT TAACCACGAT TCCCAACGAC GTCGCAGTGG TCGCTACAAC GGGAAAATGC
GGCCGGGAGC TGTTTACCTT GGAAGATCGG AAACAGCACA TTTATCAGGT CGGTTCCATG
GGGGCCGCGA GCGCCATGGC TCTCGGGATA GCGTTAACGA CTCAGCGACG GGTGATCGTG
ATCGACGGCG ACGGAGCGGC TCTCATGAAA TTGGGGAATT TAGCAACGAT CGGAGCTCGG
CGCCCTGCGA ACTATATTCA CCTTCTTCTC GACAACGGTG TCCACGATAG TACCGGTGGG
CAGGCGACGG TATCACCATC AGTCGATTTT GCAGCTGTAG CAATTTCGTG TGGGTACTGC
TCTGCTTGGA CGTGCGACGA TTTGGAAGGT TTGGAAACTG CCGTAGCCAA TGCGTTTCGT
AGTGTCGGAC CGACAATGAT ACATATGCGC ATTGCGCCCG GTTCAATGAA AAATCTCGGA
AGGCCGACTC TATCACCAGC AGAGGTGGCG CTTCGCTTCA AAGCATTTTT GCAGGAACGA
TAA
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| Protein sequence | MISADSFIDT AISNGFSFFS GVPCSYLSPL INRVISRRDA NYVGATSEGE AVAIAAGAWL
AGRQTVVMCQ NSGLGNAVNP LTSLNYPFRI PTLLVVTWRG KPGEADEPQH VLMGRITKEL
LAVIDVPSDE FPALEANIGP ALQNARNRMA TSSLPFAMIM SRDAVANSAL DEVSIIERGV
SGPNTNLTIG GHRPSRHAVL ERLLTTIPND VAVVATTGKC GRELFTLEDR KQHIYQVGSM
GAASAMALGI ALTTQRRVIV IDGDGAALMK LGNLATIGAR RPANYIHLLL DNGVHDSTGG
QATVSPSVDF AAVAISCGYC SAWTCDDLEG LETAVANAFR SVGPTMIHMR IAPGSMKNLG
RPTLSPAEVA LRFKAFLQER
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