| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3171 |
|---|
| Symbol | lgt |
|---|
| ID | 7388114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2626523 |
|---|
| End bp | 2627386 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643652098 |
|---|
| Product | prolipoprotein diacylglyceryl transferase |
|---|
| Protein accession | YP_002550282 |
|---|
| Protein GI | 222149325 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0682] Prolipoprotein diacylglyceryltransferase |
|---|
| TIGRFAM ID | [TIGR00544] prolipoprotein diacylglyceryl transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.105737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACACAG TAGCCAGCCT TTTCGCCATT CTGCCCTATC CGCAGATCGA CCCGATTGCG
CTCAGCATCG GCCCCGTTGC CATTCGCTGG TATGGACTGG CCTATGTTAC GGGCATTCTC
ATCGGCTGGT GGCTGGCGCG CCGGATGATC GCCAATCTGT CGCTCTGGCC CGGCAACACC
ACGCCGATCA CCGAAAAGCA CCTGGATGAT TTTCTGGTCT GGGCGGCGAT CGGCATCGTG
CTGGGCGGGC GGATTGGCTA CATCCTGTTC TATGATCTGC AACCAGTGCT GGACAATCCG
CTGGTGGCGC TGGAAATCTG GCGCGGCGGC ATGTCCTTCC ATGGCGGCCT GACTGGCGCG
ACGCTGGCAA TGATCGTCTT TGCCCGCCGC AACGGTCTGC CCGTGTGGAT GCTGTTCGAC
CTCGTAGCCT GTGTTGCACC CATCGGTCTG TTCTTTGGCC GGATCGCCAA TTTCATCAAC
GGCGAATTGT GGGGCCGAGT AAGCGATGTA GCCTGGGCCA TGCAATTCCC GACCGGCGGT
CCCTTCACTC GCCATCCAAG TCAGCTTTAT GAAGCAGCAC TGGAAGGCCT CGTGCTGTTT
GTGCTGCTGC AAGTGCTTGC CCGCCAGTTC CACGCGCTGA AAACCTCAGG CGTTATCAGC
GGCGTATTTA TCTGCGGCTA TGCGTTGGCG CGTATTTTTG TCGAATTTTT CCGGGAACCA
GATGAGCAGC TTGGCTATCT GGTAGGTGGC TGGTTAACCA TGGGCATGCT ACTCTCGCTG
CCGATGCTGG CGCTGGGACT GTGGGCTATC TGGCGGGCAA GACGTGCCGG GCGCAGCCAA
GAGCCGTCAG GACTAAAGGG ATGA
|
|---|
| Protein sequence | MNTVASLFAI LPYPQIDPIA LSIGPVAIRW YGLAYVTGIL IGWWLARRMI ANLSLWPGNT
TPITEKHLDD FLVWAAIGIV LGGRIGYILF YDLQPVLDNP LVALEIWRGG MSFHGGLTGA
TLAMIVFARR NGLPVWMLFD LVACVAPIGL FFGRIANFIN GELWGRVSDV AWAMQFPTGG
PFTRHPSQLY EAALEGLVLF VLLQVLARQF HALKTSGVIS GVFICGYALA RIFVEFFREP
DEQLGYLVGG WLTMGMLLSL PMLALGLWAI WRARRAGRSQ EPSGLKG
|
|---|
| |